Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq27 96.9 2e-15 seq698 89.7 3e-13 >seq27 Length=240170 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||||||||||| || || ||||| || || | | || |||| || | ||| Sbjct 62189 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGC 62248 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || || || ||||| |||| ||||| || || |||||| || || Sbjct 62249 TTGCCGGCGAAGATCAGTCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTG 62308 Query 38235 TGCTTCACATTCTGGACAGTAT--CTCCACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 ||| ||||| | || || | ||| || || || || | || ||||| || |||| Sbjct 62309 GACTTGACATTGTCGATGGTGTCGCTCGAC--TCCACCTCAAGGGTGATAGTCTTGCCCG 62366 Query 38293 TCAAGGTTTTCACGAATATCTGCATGTTT 38321 | | ||| || ||||| ||||||||| || Sbjct 62367 TGAGGGTCTTGACGAAGATCTGCATGATT 62395 >seq698 Length=460427 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || || || |||||| || || ||||| || || | || |||| || Sbjct 204014 ACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCC 203955 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || ||||| || || || || ||||||||||| | || | |||||| |||||| | Sbjct 203954 AGCTGCTTTCCAGCGAAGATGAGACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGA 203895 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || |||||| || | || || || | ||||||||| | ||||| || || Sbjct 203894 ATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCAACTTCGAGGGTAATTGTCTTC 203835 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| || || || || || ||||| Sbjct 203834 CCCGTCAATGTCTTGACAAAGATTTGCAT 203806 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | || | || |||||||||||||| || || ||||| || || Sbjct 203287 CCACCACGCAGACGGAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 203228 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | ||| |||||||| || || | || ||||| || | |||| Sbjct 203227 AGAGTGCGACCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGTTGGTCAGGGGGG 203168 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| || || | || ||||| ||| || Sbjct 203167 ATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTATCCGAGGATTCGACC 203108 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || || | ||| || ||||| |||||||| || Sbjct 203107 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 203058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944158784095