Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq434 199 5e-46 >seq434 Length=564148 Score = 199 bits (220), Expect = 5e-46 Identities = 591/903 (65%), Gaps = 20/903 (2%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || |||||||| || | |||| | | || ||||| ||||| | || ||||| | | | Sbjct 552335 TCAAACTCGTCGCCATAGACATCGGCTAGGCCAGGGCATTCGTTGGGGCACATGAGGGTC 552276 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 ||||| || | | || || || ||||| ||||| || |||||||||||||| | || Sbjct 552275 CACTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAAAGAGCCAGGAAA 552216 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 ||||| | || | ||| || || || |||||| ||| || |||||| | | | Sbjct 552215 AGATCACGGGCACGGACTTCTTCCTTGCCGTGGTTCTTTCGAAGGTCCAGGAACTCGAAA 552156 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | ||| || ||||| || || | || ||||| | | | ||||| | ||||| || ||| Sbjct 552155 ACATCCGAGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCAGGTCTCTTGTTGCCACCC 552096 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || |||| ||||||||| |||||||| | || | | ||| || | |||||| || || Sbjct 552095 TGGTCTACGTATCTAGCAGTGTTATTGAAGACACGGAGCATGGGTACAATACCGTTCGAG 552036 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 || || || || || | || || || | || ||||| || ||||| Sbjct 552035 GTGCCGTTAGTGCCGGCAATGTATGAGCCGGTAGCGCGAATGCGGTGGATGTTGAGACCA 551976 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTC 63411 || || || ||||| || ||||| | ||||| || |||| || || ||||| ||||| Sbjct 551975 ATACCACCGGCCATCTTGGAGATCATGGCGCA-GGTCTTAAGGGTGTCGTAGATACCCTC 551917 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AG 63467 || || || ||| |||||| || || || ||| || | | ||| | || | Sbjct 551916 AATGCTGTCGTCCTTCATGTCAACGAGGAAGCAGGATGAGA---GCTGA-GCCTGGGGTG 551861 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 |||| ||||| || | || || || || || || || |||| || | || || | Sbjct 551860 TTCCAGCATTGAAGAGAGTTGGGGAGGCATGGGTGAAGTATTTGCTGGACATGAGGTTAT 551801 Query 63528 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 63583 | |||| ||| | || | ||| || |||| || || || |||||||| Sbjct 551800 AGGTCTGTATAACCTTCTCCACATCATCACCCCAGATG----CCGACAGCCACACGCATG 551745 Query 63584 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63643 | ||||||||| ||||| || |||||||| | || | || | || || ||| ||| Sbjct 551744 ATCATGTGCTGCGGTCTCTCGACGATCTTATCGTCAAGCTTGAGCAGATATGATCGCTCC 551685 Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63703 ||||| || || || || || | ||| ||||||| || || | ||| | |||| Sbjct 551684 AAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCTGTCATAGACAATGGCAGAGTCA 551625 Query 63704 AGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAATG 63762 | | ||||| | | | | || ||| | | | | ||| || || |||||| | | Sbjct 551624 AAGTCCTCCTTGTGTCTCATGAC-ACACTCGTAGGTCTCCTTAGAGATCATAGGAGATGG 551566 Query 63763 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63822 || | || || || |||||||||| | | | ||| || || || | | || Sbjct 551565 CTTTCTGTTCTTTGGGTTGACATAGTGGTAGAGATCACTGATGACAGCAGACCACTGCTT 551506 Query 63823 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 63882 || || | |||||||| ||||| ||||| || | || || || |||||||| || || Sbjct 551505 CTTGGTCTGCTTGTGTAGGTTTGACACGGCAATACGTGCAGCGAGGATGGCATAGTCTGG 551446 Query 63883 ATG 63885 || Sbjct 551445 GTG 551443 Score = 89.7 bits (98), Expect = 7e-13 Identities = 340/531 (64%), Gaps = 5/531 (1%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||| || || ||||||| |||| || ||||| || |||||||| || || || || Sbjct 553487 GTGAACTGGATAGGAGCGGCAGCGGCTTGTGTACGAAGGTAGTACATGCCAGTCTTCAGT 553428 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 ||||| |||| || |||||||||||| || | ||| | | || ||| || Sbjct 553427 CCGAGCTTCCAACCAGTAAAATGCATACTGGTAATCTTGCCCATAGTGGGTTCTCTCATG 553368 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 ||||| |||| ||||| || || ||||| || || | ||| || ||||| | | | Sbjct 553367 TGGATGTTCAGCGATTGGGACTGGTCAATGAATGCACCACGGTCAGCGGCCATCTGGACA 553308 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 | || || | |||||||||| || || || | ||| ||||| | || | Sbjct 553307 ACAGTTCGCTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTTATATCGGCAGGGRTG 553248 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | | |||||||| || || || || || || || | ||||| || |||| | Sbjct 553247 TTAGGAATGTTCTGAATCGAACCGCCCTCAGCAATGATACGGTTCTTCATGCTATCAGAC 553188 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 || | | || | | | | || | || || || || || ||||| ||| Sbjct 553187 CAGAGACCCATATCAACAAGATCCTTGAGTAACCAAGGGTTGACAACCTGGAATTCGCCA 553128 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 | | || | || | || ||||| ||| || || || | | ||||| || ||| Sbjct 553127 GCAAGGACACGGCGGGAATAGATATTCGAGGTGTAAGGCTCGAAGCATTCATTGTTACCC 553068 Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC- 62325 | || || | ||| || || ||||| || || ||||| || || || | | ||| Sbjct 553067 AGGATCTGGGAAGTACTGGCTGTAGGCATGGGGGCGACCAACAAGCTGTTGCGTACACCA 553008 Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 62376 || || | | ||||| || ||||| | ||| | ||| ||||||||||| Sbjct 553007 GTTTGCT-TAATTTTCTCCTTTAGGCTTGTCCAGTCCCAGAGATCCGACGG 552958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626099302000