Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq334 95.1 2e-14 seq28 86.0 1e-11 >seq334 Length=652976 Score = 95.1 bits (104), Expect = 2e-14 Identities = 242/367 (66%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||||||| Sbjct 129191 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTG 129132 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||| ||| | || || || || || | ||||| || || ||||| | Sbjct 129131 GCGCGGTACACCTTCTCGTTACCGAGGGCGACCAATAGACGGTCGGCGACGAACTCGATG 129072 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | | ||||||||| | | || || | |||||| | | Sbjct 129071 TACTGCTTCATGAGGTTGGCGTTCATGCCGAGTAGGGCGCAGGGCAGTGCCTCCGTCAAG 129012 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAA-----TTGCCTTCACCTGTGCCAGAG 251797 ||||||| ||| |||| || || || | | | | | || | |||| | | Sbjct 129011 AATTCCTGCTCGATGGCGACGGCATCTGTGATGATCTTCTGGACGACATCCTTGCCGGGG 128952 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 | ||||| || | ||| |||| || | | || | ||| |||||||||| Sbjct 128951 --CGGTTGTT---GAGGTGCGAGAACAGTAGGCAGGCGAAGTCGGTGTGGAGACCCTCGT 128897 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||||| |||||| || | |||||| ||||| | ||||| ||| |||||| Sbjct 128896 CACGCGAGATGAGCTCGTTAGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCC 128837 Query 251918 AGAAGAT 251924 ||||||| Sbjct 128836 AGAAGAT 128830 >seq28 Length=286031 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 275270 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 275211 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 275210 CCCGCATCGGGC 275199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027826988976545