Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq434 230 2e-55 >seq434 Length=564148 Score = 230 bits (254), Expect = 2e-55 Identities = 613/923 (66%), Gaps = 14/923 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| ||| ||||| || || || |||||| | || | Sbjct 551656 AACTACCAATACTTCGGCTTCAAGACTTTGGAGCGATCATATCTGCTCAAGCTTGACGAT 551715 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | | |||| ||||||| || || | ||||| || || |||| || || | Sbjct 551716 AAGATCGTCGAGAGACCGCAGCACATGATCATGCGTGTGGCTGTCGGCATCTGGGGTGAT 551775 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATG-CGGGACAAGAGGTATACCATGGC 93893 || || ||| ||| | | | | | | |||| | | || | | ||||| | Sbjct 551776 GATGTGGAGAAGGTTATACAGACCTATAACCTCATGTCCAGCAAATACTTCACCCATG-C 551834 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT-GA 93952 | |||| || || ||||| || || || || | | ||| | || || || ||||| | Sbjct 551835 CTCCCCAACTCTCTTCAATGCTGGAACACCCCAGGCTCAGCTCTCATCCTGCTTCCTCGT 551894 Query 93953 TGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012 |||| | |||| |||| ||| || || | ||||| ||| ||| ||| || | | Sbjct 551895 TGAC-ATGAAGGACGACAGCATTGAGGGTATCTACGACACCCTTAAGACCTGCGCCATGA 551953 Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072 |||| || || || || || || ||| ||||| | | || || | || || | Sbjct 551954 TCTCCAAGATGGCCGGTGGTATTGGTCTCAACATCCACCGCATTCGCGCTACCGGCTCAT 552013 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 |||| ||| || || |||||||| ||||| | || || |||||||| |||||||| | Sbjct 552014 ACATTGCCGGCACTAACGGCACCTCGAACGGTATTGTACCCATGCTCCGTGTCTTCAATA 552073 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || | ||||| ||||||||||| | ||| ||| |||| || |||||| Sbjct 552074 ACACTGCTAGATACGTAGACCAGGGTGGCAACAAGAGACCTGGTGCTTTTGCCATCTATC 552133 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 ||||||| |||||| |||| || | ||| | ||||| ||||||||||||||||| | Sbjct 552134 TCGAGCCTTGGCACTCGGATGTTTTCGAGTTCCTGGACCTTCGAAAGAACCACGGCAAGG 552193 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | | | ||| | || || ||| ||||| ||| | || ||||| || ||||| | Sbjct 552194 AAGAAGTCCGTGCCCGTGATCTTTTCCTGGCTCTTTGGATTCCCGACCTCTTCATGAAGC 552253 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | |||||||| || || |||| || | || ||||| ||||| || || || ||| Sbjct 552254 GTGTCGAGAAGAATGGCGAGTGGACCCTCATGTGCCCCAACGAATGCCCTGGCCTAGCCG 552313 Query 94373 ACGTTTGTGG-ATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGC 94430 | || | ||| || | ||||| | | |||| | |||||| | |||| | ||| Sbjct 552314 ATGTCTATGGCGACGAG-TTTGAGGCCCTGTACGAGAAGTACGAAGCAGAGGGTCGTGGC 552372 Query 94431 --CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | |||| ||| | ||| |||||||||| || || | || | ||| ||| Sbjct 552373 CGCCAGAAGATTA---AGGCTCAGAAGCTGTGGTATGCCATTCTCGAAGCTCAGACTGAG 552429 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 || || | |||| ||| | | |||||| | ||| |||| |||| ||||||| || | Sbjct 552430 ACTGGAAACCCCTTCATGCTTTACAAGGATCACTG-CAACCGCAAGAGCAACCAGAAGAA 552488 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| || || |||||||| || ||||| ||||| ||||||| || | || || Sbjct 552489 CCTTGGTACTATTCGCAGCTCGAACCTCTGCACTGAGATCATCGAGTACTCTGCCCCTGA 552548 Query 94608 CGAGATTGCTGTGTGTAACCTGG 94630 |||| | ||||| || ||| ||| Sbjct 552549 CGAGGTGGCTGTTTGCAACTTGG 552571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494718592890200