Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq334 132 5e-26 seq737 111 2e-19 seq27 109 5e-19 seq698 102 8e-17 >seq334 Length=652976 Score = 132 bits (146), Expect = 5e-26 Identities = 338/514 (66%), Gaps = 13/514 (3%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 || ||| | |||| ||||| | ||||| || | ||||||| | | | |||| Sbjct 128704 CCTTGCATCCGCAGGAAGGCGGACTGGGCCCTGCACTGGATCGCTGACAAGAAGTCCACC 128763 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | ||| |||| || | ||||| ||| ||||||||| | || || ||| ||| Sbjct 128764 TTCGCCCAGCGTTTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTC 128823 Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 ||| ||||||| | | || | | || | |||||||||||||| ||| |||||| Sbjct 128824 GCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCTAACGAG 128883 Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGC 52568 | || ||||| ||||| || || ||||| ||||| || ||||| || | ||| Sbjct 128884 CTCATCTCGCGTGACGAGGGTCTCCACACCGACTTCGCCTGCCT-----ACTGTTCTCGC 128938 Query 52569 GTGACCGAAAAATTGGATTCGGACACGAT-----CCTGAGCATGTTCAAGGAGGCGGTGG 52623 ||| || | | ||| | ||| || || || ||| || || || | Sbjct 128939 ---ACCTCAACAACCGCCCCGGCAAGGATGTCGTCCAGAAGATCATCACAGATGCCGTCG 128995 Query 52624 CTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGC 52683 | ||||| |||| || || |||| || ||||| || || || ||||||||||| Sbjct 128996 CCATCGAGCAGGAATTCTTGACGGAGGCACTGCCCTGCGCCCTACTCGGCATGAACGCCA 129055 Query 52684 AGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGC 52743 | |||| ||||||||||||| || || || ||||| ||||| ||||| | Sbjct 129056 ACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGTCTATTGGTCGCCCTCGGTAACG 129115 Query 52744 CAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 ||| | | ||| || || || || || ||| | ||||| || || | |||| Sbjct 129116 AGAAGGTGTACCGCGCCACAAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCA 129175 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||| ||||||||||| |||||||| || Sbjct 129176 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 129209 >seq737 Length=337091 Score = 111 bits (122), Expect = 2e-19 Identities = 139/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || |||||||||||| || |||| Sbjct 284561 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCG 284620 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| |||||||||||||| || || || || || ||||| ||| |||| | || Sbjct 284621 AAGATCAGACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTC-CTGAATTTTGGACTTGAC 284679 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| ||||||||||||| || | || ||||| || || || | Sbjct 284680 ATTG-TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTAAGGGTCT 284738 Query 138599 TTACAAA 138605 | || || Sbjct 284739 TCACGAA 284745 >seq27 Length=240170 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | ||| || |||||||||||| || |||| | Sbjct 62200 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 62259 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || ||||||||||| || || || || || ||||| ||| || || | ||| Sbjct 62260 GATCAGTCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 62319 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||||||| ||||||||||||| | || | || || || || || || || | Sbjct 62320 G-TCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 62378 Query 138602 CAAAAATCTGCATG 138615 | || ||||||||| Sbjct 62379 CGAAGATCTGCATG 62392 >seq698 Length=460427 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||||| || || ||||| | || ||||||| | Sbjct 203771 GACTCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGGCCATCCTCCAACTGCTTACCGGCA 203712 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || |||||||| || || || || || ||||| ||| || ||| | Sbjct 203711 AAGATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCCTTGTCCTGGATCTTGGATTTGACG 203652 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | ||||||||||| | || | || || ||||| ||||| || Sbjct 203651 TTGTCGATCGTGTCCGAAGACTCCACCTCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTC 203592 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 203591 ACGAATATTTGCAT 203578 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | |||||||| || ||||||||||||||| Sbjct 204032 CCTCCACGGAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 203973 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| || || || || | |||| ||||| ||||| || ||||| Sbjct 203972 AGAGTGCGACCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGTTGTTGATCAGGAGGA 203913 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | ||| || | |||||||| || || | Sbjct 203912 ATGCCTTCCTTGTC-CTGAATCTTGCTCTTCACGTTG-TCGATGGTGTCGGAAGATTCAA 203855 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || || |||| || || ||||| || ||||| Sbjct 203854 CTTCGAGGGTAATTGTCTTCCCCGTCAATGTCTTGACAAAGATTTGCAT 203806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257778556400