Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq334 149 6e-31 seq698 104 2e-17 seq27 87.8 2e-12 >seq334 Length=652976 Score = 149 bits (164), Expect = 6e-31 Identities = 361/543 (66%), Gaps = 23/543 (4%) Strand=Plus/Plus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| |||| | ||| || ||| | ||||| ||||| || |||||| || | Sbjct 128680 CTCTTCAACGCCATCGACACCATCCCTTGCATCCGCAGGAAGGCGGACTGGGCCCTGCAC 128739 Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165 | || | || | || ||| | ||| | ||||||||||| || ||| ||||||| Sbjct 128740 TGGATCGCTGACAAGAAGTCCACCTTCGCCCAGCGTTTGATCGCCTTTGCCGCCGTCGAG 128799 Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225 ||| |||||||| || ||| || | || || | | || | || | ||| Sbjct 128800 GGCATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATG 128859 Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285 |||||||| || || |||||||| |||||| | ||||| || || |||||| |||| Sbjct 128860 CCCGGCCTGACCTTCTCTAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTC 128919 Query 47286 GCCTGTCT------CT---ACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACC 47336 ||||| || || || ||||| | || ||| ||| || | Sbjct 128920 GCCTGCCTACTGTTCTCGCACCTCAACAACCGCCCCGG-CAA-----GGATGT------C 128967 Query 47337 GTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396 ||| | || | | || ||||||||||| ||| ||| || || | ||||| ||| Sbjct 128968 GTCCAGAAGATCATCACAGATGCCGTCGCCATCGAGCAGGAATTCTTGACGGAGGCACTG 129027 Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456 ||| | || | || |||||||| | | |||| |||||||||| || |||||| Sbjct 129028 CCCTGCGCCCTACTCGGCATGAACGCCAACCTCATGAAGCAGTACATCGAGTTCGTCGCC 129087 Query 47457 GACCGCCTGCTCGTTCAGCTAAAGTATCCC-AAGATTTACCACACCGAGAATCCATTCGA 47515 ||||| || | || || ||| | ||| | |||| | || || || ||||| Sbjct 129088 GACCGTCTATTGGTCGCCCTCG-GTAACGAGAAGGTGTACCGCGCCACAAACCCCTTCGA 129146 Query 47516 GTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGA 47575 || ||| | ||||| || |||| |||||||||||||| |||||||||||||||||||| Sbjct 129147 CTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGA 129206 Query 47576 ATA 47578 || Sbjct 129207 CTA 129209 >seq698 Length=460427 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| | || || ||| || ||||| || || Sbjct 203546 GTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCCTCAAGCTGCTTGCCG 203487 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||||||||||||| || ||||| ||||||||||||||| || ||| |||| Sbjct 203486 GCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 203427 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || || ||||| || || Sbjct 203426 ACATTGTCGATGGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTTCCGGTAAGGGTC 203367 Query 127097 TTTACAA 127103 ||||||| Sbjct 203366 TTTACAA 203360 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||| | || | || | || ||||| || ||||| ||||| |||| | Sbjct 203804 CCACCGCGAAGTCGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGCTC 203745 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || | ||| || || || |||| | ||| || || ||||| || Sbjct 203744 AGCGTTCGGCCATCCTCCAACTGCTTACCGGCAAAGATAAGTCGTTGTTGGTCGGGCGGG 203685 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || |||| |||| |||| ||||||| | ||| || Sbjct 203684 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACGTTG-TCGATCGTGTCCGAAGACTCCAC 203626 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || ||||| || || || || ||||| Sbjct 203625 CTCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTCACGAATATTTGCAT 203578 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | |||||| || || || || ||||| ||| | Sbjct 203252 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCGTCTTCAAGTTGCTTTCCGGCGAA 203193 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||||||||||| || || || || ||||||||||||||| ||| ||| ||| | ||| Sbjct 203192 AATCAATCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTT 203133 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||| |||| ||||| || | || | || |||||||| || || || | Sbjct 203132 G-TCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 203074 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 203073 CGAAGATCTGCAT 203061 >seq27 Length=240170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | ||||| || || || || || || ||| | Sbjct 62200 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 62259 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||| |||||| || ||||| || || |||||||||||| ||| || ||||| | Sbjct 62260 GATCAGTCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 62319 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||| | ||| || || | ||| | || ||||| || || || || || Sbjct 62320 GTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 62379 Query 127102 AAAAATCTGCATG 127114 || ||||||||| Sbjct 62380 GAAGATCTGCATG 62392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496371898800