Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02-
23] 745 sequences; 39,901,278 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq334 158 1e-32
seq57 134 2e-25
seq434 123 3e-22
seq32 93.3 5e-13
>seq334
Length=652976
Score = 158 bits (174), Expect = 1e-32
Identities = 209/288 (73%), Gaps = 9/288 (3%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| || ||| | ||||| |||| |||||||||||||| || |||||
Sbjct 128904 ACCCTCGTCACGCGAGATGAGCTCGTTAGAGAAGGTCAGGCCGGGCATGAGACCACGCTT 128845
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||||| | ||| || ||| |||||||||||||||||||||||
Sbjct 128844 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAA 128785
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355
| |||| | |||| ||| |||||| || || ||||| |||||| | || ||
Sbjct 128784 GGCGATCAAACGCTGGGCGAAGGTG--GA----CTTCTTGTCAGCGATCCAGTGCAGGGC 128731
Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415
|||||| ||||| | | | | || | |||||||||||| ||||| ||| |||
Sbjct 128730 CCAGTCCGCCTTCCTGCGGATGCAAGGGATGGTGTCGATGGCGTTGAAGAGATGGGTCTT 128671
Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| ||| || ||||||| || ||||| || ||||| || ||||||||
Sbjct 128670 CTGGGCGGGCTCCTTGATGTATGTGTCAATGAGGAGAGAGTAGGTCTC 128623
Score = 136 bits (150), Expect = 5e-26
Identities = 228/323 (71%), Gaps = 9/323 (3%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| |||||| |||||| |||||||||||||| |||| |||||
Sbjct 129218 GCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 129159
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||| | | ||| ||| ||| ||||| | |
Sbjct 129158 TTCTCCATGAAGTCGAAGGGGTTTGTGGCGCGGTACACCTTCTCGTTACCGAGGGCGACC 129099
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
| || ||||||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct 129098 AATAGACGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCGAGT 129039
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || ||||| | ||| ||| || || | |||||| ||||||| || ||||
Sbjct 129038 AGGGCGCAGGGCAGTGCCTCCGTCAAGAATTCCTGCTCGATGGCGACGGCATCTGTGATG 128979
Query 868931 ATCTGCCTGGGC-ACGTC--GGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986
|||| |||| | || || |||| || | ||||||| | | || | | || |||||
Sbjct 128978 ATCT-TCTGGACGACATCCTTGCCGGGGCGGTTGTTGAGGTG---CGAGAACAGTAGGCA 128923
Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008
||| |||||| ||| | |||||
Sbjct 128922 GGCGAAGTCGGTGTGGAGACCCT 128900
>seq57
Length=873703
Score = 134 bits (148), Expect = 2e-25
Identities = 95/109 (87%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251
|||||||| || |||||| |||| || ||| |||| |||||| |||| ||||||||||||
Sbjct 556963 AACTACCTGGATATCAAGGCTCTCCTTGATGTTGGTTGCAAGACTGTCGCCAACATGATC 556904
Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||| |||||||||||||||||||| || ||||||| | |||
Sbjct 556903 AAGGGCAAGTCTCCCGAGGAGATCCGCAAGACGTTCAACATCACGAACG 556855
>seq434
Length=564148
Score = 123 bits (136), Expect = 3e-22
Identities = 182/258 (71%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| | || |||| || ||||| ||||||||||| || | ||||| ||
Sbjct 552096 CTGGTCTACGTATCTAGCAGTGTTATTGAAGACACGGAGCATGGGTACAATACCGTTCGA 552037
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||| ||||| || | ||| | ||||| ||||| | ||| | | ||
Sbjct 552036 GGTGCCGTTAGTGCCGGCAATGTATGAGCCGGTAGCGCGAATGCGGTGGATGTTGAGACC 551977
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || |||||| ||||||||| | ||||| || || ||||||||||| |||||
Sbjct 551976 AATACCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTAAGGGTGTCGTAGATACCCTC 551917
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| |||| |||||||||| ||||| ||||| || ||| || | || | || ||
Sbjct 551916 AATGCTGTCGTCCTTCATGTCAACGAGGAAGCAGGATGAGAGCTGAGCCTGGGGTGTTCC 551857
Query 1630305 GGCGTTGAAGAGCGTGGG 1630322
|| |||||||| || ||
Sbjct 551856 AGCATTGAAGAGAGTTGG 551839
>seq32
Length=575693
Score = 93.3 bits (102), Expect = 5e-13
Identities = 201/292 (69%), Gaps = 18/292 (6%)
Strand=Plus/Plus
Query 1572462 CGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAACGTGG---TCGGCGTCGGTGT 1572518
|||||||| ||||||||||| ||||| | | ||| || |||||||||| ||
Sbjct 310095 CGATGAGC---TGGGCGATGCGG---TCGCCGACGGCGACGGGGAAGTCGGCGTCGGCGT 310148
Query 1572519 GGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCCGA 1572578
||||||| |||| ||| | |||||| |||||||| ||||||||||| |||||
Sbjct 310149 GGTTGAACAGCAGGACCTTGAGGGGGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCCG 310208
Query 1572579 CGTCGATG----CCCCTGACGGCCAGGGACGAGCGCGGCGCCACGCGCCCATAGTAGCCC 1572634
||||||| | ||| ||||| ||| ||||||||||| ||||| || ||
Sbjct 310209 TGTCGATGAAGTGCTTCGAC-GCCAGCCCCGACCGCGGCGCCACCCGCCCGTACGTCCCT 310267
Query 1572635 GCGGGTATGGCCACGGCCAGACCGGTGCGCACCTGCGCGCGGCCGCGTGCCGGCACGGTC 1572694
|| || | || | | | | || ||| |||| |||||| ||||| | | |
Sbjct 310268 GCTGGCACCGCGATGCTGATGTCCGTCTCCACGAGCGCCTTGCCGCGCGCCGGGATCGAC 310327
Query 1572695 GTCG-TCCCGACAGCCCACAGATCGTATCCGGCGGCGCCTGGCG-TGCCGCG 1572744
|||| | |||| || |||| ||||| ||||||||| |||| |||||||
Sbjct 310328 GTCGCTTGCGAC-GCGTACAGGTCGTACCCGGCGGCG-AAGGCGCTGCCGCG 310377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107078061811165
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |