Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq334 159 3e-34 seq698 95.1 1e-14 >seq334 Length=652976 Score = 159 bits (176), Expect = 3e-34 Identities = 353/524 (67%), Gaps = 19/524 (4%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||||||||||| ||||| || ||||| || ||||| | | || ||||| | Sbjct 129213 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTC 129154 Query 120411 CATAAACTCGAACGGGTTGCT--CGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGC 120468 ||| || ||||| ||||| | |||| || | | ||| | || | || | Sbjct 129153 CATGAAGTCGAAGGGGTTTGTGGCGCGGTACACCTTCTCG--TTACCGAGGGCGACCAAT 129096 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528 || ||||| || || ||||| ||||||| |||| | ||||||||||| || | Sbjct 129095 AGACGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCGAGTAGG 129036 Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT- 120587 || |||| ||| ||| || || |||| ||| ||| | || || || ||| || Sbjct 129035 GCGCAGGGCAGTGCCTCCGTCAAGAATTCCTGCTCGATGGCGACGGCATCTGTGATGATC 128976 Query 120588 -----GGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGG 120642 | ||| ||| | |||||| |||| | | |||| | | |||| | Sbjct 128975 TTCTGGACGA-CATCCTT--GCCGGGGCGGTTGT-TGAGGTGCGAGAACAGTAG-----G 128925 Query 120643 CACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGG 120702 || || ||||| ||||| || |||||||| ||||| || |||||||| || |||||| Sbjct 128924 CAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTAGAGAAGGTCAGG 128865 Query 120703 CCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAAC 120762 |||||||||| || | |||||| |||| |||| ||| ||| || ||||| Sbjct 128864 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAG 128805 Query 120763 ACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCG 120822 | |||||| ||| ||||||||||| || |||| ||| || || | | ||||| || Sbjct 128804 ATGCCCTCGACGGCGGCAAAGGCGATCAAACGCTGGGCGAAGGTGGACTTCTTGTCAGCG 128745 Query 120823 ATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 ||||| | || |||||| || ||||| |||| | ||| || || Sbjct 128744 ATCCAGTGCAGGGCCCAGTCCGCCTTCCTGCGGATGCAAGGGAT 128701 >seq698 Length=460427 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| ||| | || | | | ||||| ||||||||||| Sbjct 203546 GTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCA-TCCTCAAGCTGCTTGCC 203488 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| ||||| ||||| |||||||| ||||| ||| Sbjct 203487 GGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTT 203428 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | ||| || || | ||||| ||| || ||||| || || Sbjct 203427 GACATTGTCGATGGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTTCCGGTAAGGGT 203368 Query 133643 TTTTAC 133648 ||||| Sbjct 203367 CTTTAC 203362 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| |||||| |||||||| || Sbjct 204002 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACC-GTCCTCCAGCTGCTTTCC 203944 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || || || || ||||| |||||||||||||| ||||| ||| Sbjct 203943 AGCGAAGATGAGACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGCTCTT 203884 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| | || || |||| ||| | || || || |||| || Sbjct 203883 CACGTTGTCGATGGTGTCGGAAGATTCAACTTCGAGGGTAATTGTCTTCCCCGTCAATGT 203824 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 203823 CTTGACAAAGATTTGCAT 203806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416298143800