Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02-
23] 745 sequences; 39,901,278 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq27 179 3e-40
seq737 147 2e-30
seq698 140 3e-28
>seq27
Length=240170
Score = 179 bits (198), Expect = 3e-40
Identities = 179/230 (78%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| || || || |||||||||||||| ||||| |||||||||
Sbjct 62165 CCACCACGGAGGCGGAGCACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 62224
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| ||||| |||||||||||||| ||||| ||||||||||| | |||
Sbjct 62225 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGTTGGTCGGGGGGG 62284
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| || ||| || | || | ||||||||||||||||
Sbjct 62285 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGCTCGACTCCA 62342
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 62343 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 62392
>seq737
Length=337091
Score = 147 bits (162), Expect = 2e-30
Identities = 168/221 (76%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || ||| ||||||||| ||||| ||||||||
Sbjct 284528 CCACCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 284587
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||| |||||||||||||| ||||| ||||||||||| | |||
Sbjct 284588 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGG 284647
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || |||||||||| ||| |||| | ||| || | || | |||||| ||||||
Sbjct 284648 ATGCCCTCCTTGTCC-TGAATTTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCC 284704
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853
||||| | || || || |||||||| || ||||| |||||
Sbjct 284705 ACCTCGAGGGTGATAGTCTTACCCGTAAGGGTCTTCACGAA 284745
>seq698
Length=460427
Score = 140 bits (154), Expect = 3e-28
Identities = 174/236 (74%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | || || || || |||||||||||||| ||||| ||||||||
Sbjct 203288 GCCACCACGCAGACGGAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 203229
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| || || ||||| |||||||| |||| ||||||||||| | |||
Sbjct 203228 AAGAGTGCGACCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGTTGGTCAGGGGG 203169
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| |||| | | | || || || || |
Sbjct 203168 GATGCCCTCCTTGTCCTGGATCTTCGACTT-AACGTTGTCGATGGTATCCGAGGATTCGA 203110
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869
|||| | || || || || || || || ||||| ||||| |||||||| || |||
Sbjct 203109 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTTGTCG 203054
Score = 123 bits (136), Expect = 2e-23
Identities = 161/218 (74%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || ||| |||||||| ||||| ||||||||
Sbjct 203576 CCACCACGGAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAT 203517
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || ||||||||||||||||| |||| ||||| ||||| | |||
Sbjct 203516 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGA 203457
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || |||||||||| ||| | || | ||| || | || | |||||| ||||||
Sbjct 203456 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACATTGTCG--ATGGTGTCGGACGACTCG 203400
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
||||||| || || || || || || || ||||||||
Sbjct 203399 ACCTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTTAC 203362
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | || || ||||| || ||||||||||||||| ||||||
Sbjct 203804 CCACCGCGAAGTCGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGCTC 203745
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || | |||||| ||||| || || || || |||||||| | ||
Sbjct 203744 AGCGTTCGGCCATCCTCCAACTGCTTACCGGCAAAGATAAGTCGTTGTTGGTCGGGCGGG 203685
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| || | || | || ||| | | | ||||| ||||||||
Sbjct 203684 ATTCCCTCCTTGTCC-TGGATCTTGGATTTGACGTTGTCGATCGTGTCCGAAGACTCCAC 203626
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| || |||||
Sbjct 203625 CTCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTCACGAATATTTGCAT 203578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462299694794000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |