Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq15 129 1e-24 seq2 91.5 3e-13 >seq15 Length=993015 Score = 129 bits (142), Expect = 1e-24 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAACGCTGAACTTATG 230472 |||||||| | || ||| | || || |||| || | ||||||||||| | || ||| Sbjct 219699 AGGAGTTCCTGACGGAGGCTTTGCCCTG-CGCCCTACTAGGCATGAACGCCAACCTCATG 219641 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 ||||||||||| ||||| ||||||||| | | || || || || | ||||| ||| Sbjct 219640 AAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCCCTCGGCAATGAGAAGGTG 219581 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 ||| ||| | |||||||| | ||||||||| ||| || || || ||||||||| Sbjct 219580 TACCGCTCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTGGCAAGACCAAC 219521 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||| ||||| || |||| || |||| | | ||||| ||| Sbjct 219520 TTCTTCGAGAAGCGCGTTGGTGATTACCAGAAGGCCGGTGTCATG 219476 >seq2 Length=2464614 Score = 91.5 bits (100), Expect = 3e-13 Identities = 208/307 (68%), Gaps = 6/307 (2%) Strand=Plus/Plus Query 282507 TCGGTCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCG 282566 |||| ||||||||||| ||| ||||||| || || |||| | || |||| | Sbjct 119455 TCGGCCATGATCATCAAATGCCCGTATCGGAGGGATTTGTTGTCGGTATATACTTGTTTG 119514 Query 282567 GTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGATACTTGCC 282626 | ||||| | || ||| |||| ||||||| ||||| |||| || | | Sbjct 119515 TGCTTCAGGCCAAGAAATTGCTTGATATTCTGAATTTCTTGATTCTTCATGAT-CTGGTC 119573 Query 282627 -ACAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCTC 282685 | || |||||||||||||| |||| |||||| ||||| || || |||||| | || Sbjct 119574 GATTGAAGCATCGCGAACGTTGAGCATCTTACCTCGGAGGGGGAAGACACCAATGCGATC 119633 Query 282686 GCGACCGACCACGGACAGTCCTGCAATTG-CAAG-TGTTGCTGCGGAATCTCCCTCCGTC 282743 | || | | | | | || |||| | |||| | ||| |||||||| || || ||| Sbjct 119634 GGGATCCAAGATAGCACGACCAGCAACAGCCAAGCTCTTG--GCGGAATCACCTTCGGTC 119691 Query 282744 AAGATGAGAGTACACATCTTACTATGATTTGTGCCCGCCCATGCAGCATCGTTTAGTTTA 282803 ||||| ||||| ||| | || ||| || ||||||||| | ||||||| ||||| Sbjct 119692 AAGATCAGAGTGCACTCATGACCATGCTTGGTGCCCGCCAAGTTAGCATCGACAAGTTTG 119751 Query 282804 GGGATGC 282810 | | ||| Sbjct 119752 GCGTTGC 119758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057820096629440