Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq15 105 7e-18 >seq15 Length=993015 Score = 105 bits (116), Expect = 7e-18 Identities = 376/583 (64%), Gaps = 11/583 (2%) Strand=Plus/Plus Query 16180 GTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGAT 16239 ||| ||||| |||| || || ||||||||| || || || ||||| | || Sbjct 219758 GTTGAGGTGGGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAAAT 219817 Query 16240 AAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGC 16299 ||||||||||| || || | || ||||| || || ||||| | |||||| || | Sbjct 219818 GAGTTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGA 219877 Query 16300 AGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGC 16359 ||| || | || ||||| ||||||||||| | || || || || | || | || Sbjct 219878 AGCGAAGGCTCCGCTGAAGAAGATACCCTCAACGGCGGCGAAGGCAATAAGACGCTGGGC 219937 Query 16360 GTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACA 16419 | | || | | || | |||||| | | | |||| ||||| || | || || Sbjct 219938 GAAGGTGGACTTCTTGTCGGCAATCCAGTGCAGAGCCCAGTCGGCCTTCTTGCGGATGCA 219997 Query 16420 ATCCATCGTTTCTATGGCCTTAAACA-ATTTCTCTTTTTCCTGAATA---TCGATTATAT 16475 | || || || || || || || | || | |||| ||| | || | || | Sbjct 219998 AGGAATGGTCTCAATAGCATTGAAGAGATGTGTCTT----CTGGGCAGGCTCCTTGATGT 220053 Query 16476 ACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATC 16535 | || ||||| || | | |||| | || ||||| |||||||| || ||||| || | Sbjct 220054 AGGTGTCAATGAGGAGAGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGC 220113 Query 16536 CATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT 16595 | ||||||||||| ||||| | || || || || | ||||||| || | ||||| | Sbjct 220114 CGTAGAAGCATCGGGCCTCTGGGATCTGAACCTCACCAGAAAATCGCTCGACAAGGTTTT 220173 Query 16596 CATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTT 16655 | || || || ||||| ||| || || || || | ||||| ||||| | || | Sbjct 220174 CGTTGACAATGCCGTCGGATGCGGCGAAGAAGGCGAGAATGTGGGAGATGAAGAACTTCT 220233 Query 16656 CGTC-AGATGTAAGAATATG--CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTG 16712 |||| || || | || |||||| | | ||| ||||||| ||| | || || | Sbjct 220234 CGTCGTCATTTAGGCGGTTGCTCCAATCGTGGAGATCCTTGGATAGATCAATCTCCTCGG 220293 Query 16713 GCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 ||||| ||| ||| | ||| || ||||| | ||| || Sbjct 220294 CAGTCCAGAAGGAAGCTTCGTGCTTCTTGTACATCTGCCAGAT 220336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511412558908160