Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15 338 6e-88 seq52 134 1e-26 seq14 127 2e-24 seq25 122 9e-23 >seq15 Length=993015 Score = 338 bits (374), Expect = 6e-88 Identities = 568/810 (70%), Gaps = 19/810 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| ||| || || |||||||| | ||||||| | || || Sbjct 220336 ATCTGGCAGATGTACAAGAAGCACGAAGCTTCCTTCTGGACTGCCGAGGAGATTGATCTA 220277 Query 116696 TCCAAGGA-CACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||| ||| | ||| | || ||| ||||| |||||| Sbjct 220276 TCCAAGGATCTCCA-CGATTGGAGCAACCGCCTAAATGACGACGAGAAGTTCTTCATCTC 220218 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| |||||||| ||||||||| |||||||| || || |||||||| Sbjct 220217 CCACATTCTCGCCTTCTTCGCCGCATCCGACGGCATTGTCAACGAAAACCTTGTCGAGCG 220158 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 || || ||||| ||| | | ||||| || |||||||||||||| |||||| || Sbjct 220157 ATTTTCTGGTGAGGTTCAGATCCCAGAGGCCCGATGCTTCTACGGCTTCCAGATCATGAT 220098 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | ||| || |||||| ||||| ||| | | || Sbjct 220097 GGAGAACATCCACTCCGAGACGTACTCTCTCCTCATTGACACCTACATCAAGGAGC---- 220042 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||||| | | | || || || || ||||| || || ||| || |||||| Sbjct 220041 CTGCCCAGAAGACACATCTCTTCAATGCTATTGAGACCATTCCTTGCATCCGCAAGAAGG 219982 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| |||| |||||| |||| || || || |||||| | |||| || | | Sbjct 219981 CCGACTGGGCTCTGCACTGGATTGCCGACAAGAAGTCCACCTTCGCCCAGCGTCTTATTG 219922 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 ||||||| ||||| ||||| ||||||| || ||||| |||| || ||||||| Sbjct 219921 CCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGAGCCTTCGCTTCCATCTTCTGGCTCA 219862 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || || |||||||| ||||| ||| |||||| ||||| || | ||||||| Sbjct 219861 AGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAACTCATTTCGCGTGACGAGG 219802 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 ||||||| |||||| ||||| |||||||| || | | || || || || Sbjct 219801 GTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACAACCGTCCCGGCAAGG 219742 Query 117228 -CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 || | ||| | ||||| ||||||| || ||| |||| |||||| ||||| || || Sbjct 219741 ACGTG-GTCGAGAAGATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACGGAG 219683 Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGT 117344 || |||| |||| || || || | || || || | ||| ||| |||||||||| Sbjct 219682 GCTTTGCC-CTGCGCCCTACTAGGCATGAA-CGCCAACCTCATGAAGCAGTACATCGAGT 219625 Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACC 117404 ||||||||||| | |||||| | | || | | | ||| ||| | | |||||| Sbjct 219624 TCGTCGCCGACCGCCTGCTGGTGGCCCTCGGCAATGAGAAGGTGTACCGCTCCACCAACC 219565 Query 117405 CGCTGGACTTTATGAACCTCATCTCCTTGG 117434 | | ||||||||| | ||||||| ||| Sbjct 219564 CCTTCGACTTTATGGAGAACATCTCCCTGG 219535 >seq52 Length=261245 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | | | Sbjct 16570 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 16511 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| || ||| | |||||| Sbjct 16510 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 16451 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||| ||||| || || || |||| || || ||| |||||||||| Sbjct 16450 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACTCTCTCCGACTACAAC 16391 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| ||| || ||||| || Sbjct 16390 ATCCAGAAGGAGAGCACCCTTCATCTCGT 16362 >seq14 Length=1021207 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || || || ||| | || || ||| | || Sbjct 859033 ATGCAGATTTTCGTCAAGACATTGACGGGAAAGACTATTACCCTAGAAGTTGAATCTTCC 858974 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || |||| ||||| || ||||| || |||| || Sbjct 858973 GACACCATCGACAACG-TGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCA 858915 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || || |||||||| || | |||||| | | ||| ||||| Sbjct 858914 GCAACGTCTCATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTAAGCGATTACAA 858855 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||||||| || Sbjct 858854 CATCCAGAAGGAGTCCACGCTCCA 858831 Score = 114 bits (126), Expect = 1e-20 Identities = 159/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 40682 TCCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 ||||| || ||||| || ||||| || || ||||| ||||| |||||||| | || ||| Sbjct 859789 TCCGACAAGATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTC 859730 Query 40741 GAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799 ||| || | || | | | | |||| ||||| || || | ||||| ||||| || || Sbjct 859729 GAATCCTCGGATACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATTCC 859671 Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859 | ||||| || ||| | || | ||| || || ||||| || |||| ||||| || Sbjct 859670 TCCCGACCAACAGCGATTGATTTTCGCTGGAAAGCAGCTCGAGGACGGTCGCACTCTTTC 859611 Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| ||||||||| ||| || || || || Sbjct 859610 CGACTACAACATTCAGAAGGAGAGCACCCTCCACCTTGT 859572 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| || || || || || || |||||||| | || ||||| | |||||| | Sbjct 859482 TAGTCGTCAAGACCCTTACCGGAAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCA 859423 Query 40757 TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGAC 40816 | | | | ||| || || | ||||| |||||||| || | |||||||| ||| Sbjct 859422 TCGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAGCAGCGAT 859363 Query 40817 TCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGA 40876 | || | ||| ||||| ||||| || || | || ||||| ||||||||||||||||| Sbjct 859362 TGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGA 859303 Query 40877 AGGAGGCCACGCTGCATCTAGT 40898 |||| | || || || || || Sbjct 859302 AGGAATCGACTCTTCACCTCGT 859281 >seq25 Length=676740 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| || |||||| |||| || || | |||||| | | Sbjct 267063 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 267122 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| | ||||| || || || Sbjct 267123 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAGCGTCTG 267182 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| || || || |||| || || || ||||||||||||||||||| Sbjct 267183 ATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAACATCCAGAAG 267242 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| |||| || || || || Sbjct 267243 GAGTCCACCCTCCACCTCGT 267262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217345210880