Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq14 123 2e-23 seq52 116 2e-21 seq25 100 2e-16 >seq14 Length=1021207 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | || || || ||||| |||||||||||||| Sbjct 859554 CCACCACGCAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 859613 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || |||||||| | ||||| |||||| || Sbjct 859614 AGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGA 859673 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | ||| | |||||||| Sbjct 859674 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGACC 859733 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| |||||||| || || |||||||||||| Sbjct 859734 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATC 859781 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | ||| ||| ||||| ||||||||||||||| Sbjct 859263 CCACCGCGAAGACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAC 859322 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| |||||||| | ||||||||||| || Sbjct 859323 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 859382 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | |||| ||| ||||| Sbjct 859383 ATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCGATGGTGTCGGACGACTCGACC 859442 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || | |||||||| || ||||| || || || || Sbjct 859443 TCAAGAGTGATGGTCTTTCCGGTAAGGGTCTTGAC 859477 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || || || || ||||| | ||| || ||||| || ||||||||| | Sbjct 859035 CCACCACGAAGTCTGAGAACAAGGTGCAGAGTTGACTCCTTCTGAATATTGTAGTCGCTC 859094 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||||||||| || || || || || || || |||||| || Sbjct 859095 AGTGTTCGGCCATCCTCCAACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGG 859154 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| || | | | | |||| || | || || || Sbjct 859155 ATTCCTTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATCGTGTCCGAAGACTCCACC 859214 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||||||||| || ||||| ||||| ||||| Sbjct 859215 TCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 859261 >seq52 Length=261245 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34193 GTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCT 34252 || || || ||||| |||||||||||||| || |||| |||| || | |||||||| Sbjct 16374 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGCTTGCCG 16433 Query 34253 GCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT 34312 ||||| || || |||||||||||| ||| | | ||||||||| ||||| ||| Sbjct 16434 GCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 16493 Query 34313 AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTT 34372 | || | | || | ||| | || || || || | ||||| || ||||| ||||| || Sbjct 16494 ACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 16553 Query 34373 TTCACAAAGATCTGCAT 34389 || || ||||||||||| Sbjct 16554 TTGACGAAGATCTGCAT 16570 >seq25 Length=676740 Score = 100 bits (110), Expect = 2e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| |||| || | |||||||| ||||| Sbjct 267244 TCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAG 267185 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||| |||||| ||| | || ||||||||| ||||| ||| | || | Sbjct 267184 ATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 267125 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || || || | ||||| || ||||| ||||| || ||||| Sbjct 267124 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACG 267065 Query 34379 AAG 34381 ||| Sbjct 267064 AAG 267062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070866017280