Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq52 138 9e-28 seq14 136 3e-27 seq25 114 1e-20 >seq52 Length=261245 Score = 138 bits (152), Expect = 9e-28 Identities = 158/211 (75%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || |||||||||||||| |||||||||||| || || |||| || ||||| Sbjct 16368 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGC 16427 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||| |||||||| || | ||||||||||||| || || Sbjct 16428 TTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTG 16487 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | | ||||||||| | ||| || ||||||||||| Sbjct 16488 GACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 16547 Query 45314 AGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 || ||||| || ||||| |||||| |||||| Sbjct 16548 AGGGTCTTGACGAAGATCTGCATGATTGCCT 16578 >seq14 Length=1021207 Score = 136 bits (150), Expect = 3e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||||||||||||||||||||||||||| || |||| |||| || || || Sbjct 859577 GTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTG 859636 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||| ||||| ||||||||||||||||| | ||||||||||||| || || Sbjct 859637 CTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTT 859696 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | ||| || ||||| | || || |||||||| || Sbjct 859697 CGACTTGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGT 859756 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| || ||||| ||||| ||| Sbjct 859757 GAGAGTCTTGACGAAGATCTGCATCTTG 859784 >seq25 Length=676740 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || || |||| || ||||| Sbjct 267257 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTG 267198 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| |||||||||||||| || | |||||||||||| || || Sbjct 267197 CTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 267138 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| || ||||||||||| Sbjct 267137 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGT 267078 Query 45313 CAGAGTCTTCACAAAG 45328 || |||||||| ||| Sbjct 267077 GAGGGTCTTCACGAAG 267062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073813286048