Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq51 224 1e-53 seq15 159 4e-34 >seq51 Length=278824 Score = 224 bits (248), Expect = 1e-53 Identities = 737/1134 (65%), Gaps = 20/1134 (2%) Strand=Plus/Plus Query 62958 TTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 63017 || || || || ||||||| || | | || | || ||||| ||||||||||| Sbjct 149231 TTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCGATGATCTCGGTGCAAAGATTCGAG 149290 Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63077 | ||||| || | ||| | ||||||||||| ||| || |||||| ||||| Sbjct 149291 CTGCGAATAGTACCAAGATTCTTCTGATTACTCTTGCGGTTGCAGTGATCCTTGTAAAGC 149350 Query 63078 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGC 63136 ||||| ||| | ||||| ||| |||||| || | ||| || | ||| | | || |||| Sbjct 149351 ATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCACA-GCTTCTGAGC 149409 Query 63137 CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTC 63196 ||| || | | | | ||| |||||| |||| |||||||| Sbjct 149410 CTTAATCTTCTGGCGGCCGCGACCCTCTGCTTCGTACTTCTCGTACAGGGCCTCGAACTC 149469 Query 63197 GTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCC 63256 || || |||| | | | | ||| ||||| | |||||||| | | ||||||||| Sbjct 149470 ATCGCCATAAACGTCAGCTAGACCAGGGCATTCGTTAGGACACATGAGGGTCCACTCTCC 149529 Query 63257 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63316 | | || || || ||||| |||||||| || ||||| ||||| | || ||||| | Sbjct 149530 ATTCTTCTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAGCCAGGAAGAGATCGCG 149589 Query 63317 TGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63376 | | | |||||| || || |||||| |||||| |||||| | | || ||| || Sbjct 149590 GGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCAAAAACATCCGA 149649 Query 63377 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63436 ||||| || || | || ||||| | | | ||||| | ||||| || |||||||||| Sbjct 149650 GTGCCAAGGCTCGAGATAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTAC 149709 Query 63437 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATT 63496 |||||| || |||||||| | || | | ||| || | ||| ||||| || | || || Sbjct 149710 GTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTT 149769 Query 63497 GGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63556 || || | || || ||| | ||||| || ||| ||||| || || || Sbjct 149770 AGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGAATGTTGAGACCAATACCACC 149829 Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616 ||||| || ||||| | || || || | ||||||||||| || || ||||| || Sbjct 149830 GGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTC 149889 Query 63617 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676 || |||||| | || || || || | ||| | | ||||| ||||| || Sbjct 149890 GTCTTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTTCCAGCATTGAA 149949 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 | || || ||||| || || || |||| ||| | || ||||| |||| ||| | Sbjct 149950 GAGAGTTGGGGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGAC 150009 Query 63737 TGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 63792 | || | ||| || |||| || || || |||||||| | ||||||||| | Sbjct 150010 TTTCTCAACATCATCACCCCAGATG----CCGACAGCCACACGCATGATCATGTGCTGTG 150065 Query 63793 GTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 63852 |||| || ||||| |||| || | |||| | ||| ||| |||| ||| || || | Sbjct 150066 GTCTCTCTACAATCTTGTCGTCGAGCTTCAGTAGGTAAGATCGCTCCAGAGTCTTGAAGC 150125 Query 63853 CAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 | || || | ||| ||||| |||| || || | ||| | || | | | ||||| Sbjct 150126 CGAAGTATTGGTAGTTGAAA--TCTCTGTCATAGACAATGGCAGAGTCAAAGTCTTCCTT 150183 Query 63911 ATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTT 63969 || | | | || | | | | | ||| ||||| || ||||| | ||| || | Sbjct 150184 ATGTCTCATGAC-ACACTCGTATGTCTCCTTAGAAATCATAGGAGATGGCTTCTTGTTCT 150242 Query 63970 TAGGATTAACATAGTTGAATAAATC-CT-CCATCACTTCACTAAATAGtttttttGTTTC 64027 | || || ||||||| | | | || || || || || || | || || || | Sbjct 150243 TTGGGTTGACATAGTGGTAGAGGTCGCTGACAACAGAAGAC--CATTGCTTCTTCGTCTG 150300 Query 64028 CTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 ||||||||| ||||| | ||| || | ||||| || |||||||| || || || Sbjct 150301 CTTGTGTAGGTTTGACACGGCAATACGTGCGGCAAGGATGGCATAGTCTGGGTG 150354 >seq15 Length=993015 Score = 159 bits (176), Expect = 4e-34 Identities = 378/568 (67%), Gaps = 10/568 (2%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || ||||| ||| ||||||||||||||| | ||| | |||||| || Sbjct 219771 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAAATGAGTTCGTTGGAG 219830 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || |||||||| || |||||||| || ||||| || ||||||||||| | |||| Sbjct 219831 AAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCG 219890 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 |||||||| || || || || || ||||||||||| | || | || | || Sbjct 219891 CTGAAGAAGATACCCTCAACGGCGGCGAAGGCAATAAGACGCTGGGC-GAAGGTGGACT- 219948 Query 33753 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 || ||| ||||| | ||||||| ||||||||||| | ||||| || || | Sbjct 219949 TCTTGTCGGCAATCCAGTGCAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 220008 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | || ||||| ||||||| | || | | || || | || || || || | | Sbjct 220009 CAATAGCATTGAAGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGA 220068 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 || ||| | || || || ||||| || || ||||| || |||||||| |||| | Sbjct 220069 GAGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGG 220128 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 |||| | ||||| || || | ||||||| || | | ||||| || || || || | Sbjct 220129 CCTCTGGGATCTGAACCTCACCAGAAAATCGCTCGACAAGGTTTTCGTTGACAATGCCGT 220188 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA--- 34044 | || || || || || | | || || || | || ||||| ||| Sbjct 220189 CGGATGCGGCGAAGAAGGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCATTTAGGC 220248 Query 34045 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 34104 | || ||||||| | || ||| || |||| ||| | || || | ||||| || || | Sbjct 220249 GGTTGCTCCAATCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAGGAAG 220308 Query 34105 CCTCTGCCTTTTTATACATATTCCAGAT 34132 | || ||| || ||||| | |||||| Sbjct 220309 CTTCGTGCTTCTTGTACATCTGCCAGAT 220336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815332656640