Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq14 123 2e-23 >seq14 Length=1021207 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | ||| ||||| | ||| ||||| || || ||||| |||||| Sbjct 858804 TGTCCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCG 858863 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || | |||| ||||| ||||| |||||||| |||| |||||||||||||| ||| Sbjct 858864 CTTAAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGA 858923 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || |||||||| ||||| ||| | || | || | | || | ||||||| | || Sbjct 858924 GGAATGCCTTCCTTGTC-CTGAATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTC 858982 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | ||| | ||||| || ||||| || || ||||| || |||||| Sbjct 858983 AACTTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACGAAAATCTGCATA 859034 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | || ||||| || ||||| || || ||||||| ||| | || || Sbjct 859052 AACAAGGTGCAGAGTTGACTCCTTCTGAATATTGTAGTCGCTCAGTGTTCGGCCATCCTC 859111 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||| ||||| ||| |||| || ||||| || ||||| || || ||||| ||||| Sbjct 859112 CAACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCTTCCTTGTCCTG 859171 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || ||| | | || | ||||| | | ||||||||||| || | |||||| Sbjct 859172 GATCTTGGATTTGACGTTGTCGATCGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTT 859231 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| | || || ||||| ||||||||| Sbjct 859232 GCCGGTGAGGGTCTTCACGAAGATTTGCATA 859262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062214169600