Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq14 120 3e-22 >seq14 Length=1021207 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || ||||| || | ||| | ||| || || | || || || || || |||||||||||| Sbjct 858804 TGTCCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCG 858863 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || | |||| ||||| || || |||||||| |||| |||||||||||||| ||| Sbjct 858864 CTTAAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGA 858923 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || |||||||| ||||| ||| || || | | || | ||||| | | ||| Sbjct 858924 GGAATGCCTTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCA 858983 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | || | ||||| || |||||||| || ||||| || |||||| Sbjct 858984 ACTTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACGAAAATCTGCATA 859034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || || ||||| ||||||| ||| | || || | || ||||| Sbjct 859065 GTTGACTCCTTCTGAATATTGTAGTCGCTCAGTGTTCGGCCATCCTCCAACTGCTTACCC 859124 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || ||||| || ||||| || || ||||| ||||| || || ||| Sbjct 859125 GCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATCTTGGATTTG 859184 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || || |||| ||| | |||||||||||| | || Sbjct 859185 ACGTTGTCGATCGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTC 859244 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| ||||||||| Sbjct 859245 TTCACGAAGATTTGCATA 859262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012574748160