Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq15 217 2e-51 seq51 118 2e-21 >seq15 Length=993015 Score = 217 bits (240), Expect = 2e-51 Identities = 563/849 (66%), Gaps = 33/849 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||| | || ||||| ||||| | ||| ||| | ||||| Sbjct 220336 ATCTGGCAGATGTACAAGAAGCACGAAGCTTCCTTCTGGACTGCCGAGGAGATTGATCTA 220277 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT----AT 125134 |||||||| || |||||||| | || | | ||| || ||||| || || Sbjct 220276 TCCAAGGATCTCCACGATTGGAGCAACCGCCTAAATGAC---GA-CGAGAAGTTCTTCAT 220221 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || |||||| | |||||||| |||| ||||| || || |||||||| || || || || Sbjct 220220 CTCCCACATTCTCGCCTTCTTCGCCGCATCCGACGGCATTGTCAACGAAAACCTTGTCGA 220161 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253 ||||| ||| ||| | || ||||||| ||||| ||||| ||||| |||| Sbjct 220160 G-CGATTTTCTGGTGAGGTTCAGATCCCAGAGGCCCGATGCTTCTACGGCTTCCAGATCA 220102 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | ||||||| || ||||||| ||||| || | Sbjct 220101 TGATGGAGAACATCCACTCCGAGACGTACTCTCTCCTCATTGACACCTACATCAAGGAGC 220042 Query 125314 C-GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 | || | | |||||| ||||| || || || || || | || | || || || ||| Sbjct 220041 CTGCCCAGAAGACACAT-CTCTTCAATGCTATTGAGACCATTCCTTGCATCCGCAAGAAG 219983 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 || | |||| | | ||||| | ||| | ||||| | | |||| | | || | Sbjct 219982 GCCGACTGGGCTCTGCACTGGATTGCCGACAAGAAGTCCACCTTCGCCCAGCGTCTTATT 219923 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || ||||||||||| ||||| |||||||| || || || ||||||| |||||| Sbjct 219922 GCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGAGCCTTCGCTTCCATCTTCTGGCTC 219863 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || || |||||||| ||||| | ||||| | || || || |||||| Sbjct 219862 AAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAACTCATTTCGCGTGACGAG 219803 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT--ATCTGCGTCCCGAGTGC 125609 || || ||| ||||| ||| || ||||| || || || | ||||||| Sbjct 219802 GGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACAACCGTCCCG----- 219748 Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 || | || |||| || || | ||||||||||| | || || || ||| Sbjct 219747 -------GCAAGGACGTGGTCGAGAAGATCATCACCGATGCCGTCACCATTGAGCAGGAG 219695 Query 125670 TTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAG 125729 || || || || | | || | | | | ||||||||| ||| || ||| || Sbjct 219694 TTCCTGACGGAGGCTTTGCCCTGCGCCCTACTAGGCATGAACGCCAACCTCATGAAGCAG 219635 Query 125730 TACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC---CGCAAGATTTAC 125786 ||||| ||||| || || || || || ||| | | | ||| ||| | ||| Sbjct 219634 TACATCGAGTTCGTCGCCGACCGCCTGCTG---GTGGCCCTCGGCAATGAGAAGGTGTAC 219578 Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846 | ||| || ||||| || || ||| | ||| || || | || ||||||||||| Sbjct 219577 CGCTCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTC 219518 Query 125847 TTCGAGAAG 125855 ||||||||| Sbjct 219517 TTCGAGAAG 219509 >seq51 Length=278824 Score = 118 bits (130), Expect = 2e-21 Identities = 359/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | | | ||| | || || ||||| | | | |||| || || || | Sbjct 149772 ACTAACGGCACCTCGAACGGCATTGTACCCATGCTACGTGTCTTCAATAACACTG-CAAG 149714 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||| ||||| || | || || ||| | ||| |||| | || ||||| Sbjct 149713 ATACGTAGATCAGGGTGGCAACAAGAGACCTGGTGCTTTCGCCATCTATCTCGAGCCTTG 149654 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||| |||| |||||||| || | || | || || ||| |||| || || | || Sbjct 149653 GCACTCGGATGTTTTTGAGTTCCTTGATCTTCGAAAGAACCATGGCAAGGAGGAAGTTCG 149594 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 ||| | || | || || |||||| | |||||| | ||||||||||| || | | Sbjct 149593 TGCCCGCGATCTCTTCCTGGCTCTCTGGATCCCAGATCTCTTCATGAAGCGTGTTGAGAA 149534 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| | |||| ||| ||||| || || | || ||||| | || | || Sbjct 149533 GAATGGAGAGTGGACCCTCATGTGTCCTAACGAATGCCCTGGTCTAGCTGACGTTTATGG 149474 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164 ||| ||||| |||||| |||| | ||||| |||||| || || ||| || Sbjct 149473 CGATGAGTTCGAGGCCCTGTACGAGAAGTACGAAGCAGAGGGTCGCGGCCGCCAGAAGA- 149415 Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 | | || | |||| |||||| | ||||| | ||||||| |||||||||| ||| Sbjct 149414 TTAAGGCTC-AGAAGCTGTGGTACGCCATTCTCGAGGCTCAGACTGAGACTGGAAATCCC 149356 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCAT 97282 | ||| || ||||||||| | || ||||| || || || | | ||| || || || Sbjct 149355 TTCATGCTTTACAAGGATCACTGCAACCGCAAGAGTAATCAGAAGAATCTT-GGTACTAT 149297 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 |||| ||||| ||||| || || | |||||| || | || || ||| ||| || Sbjct 149296 TCGCAGCTCGAATCTTTGCACCGAGATCATCGAGTACTCCGCCCCTGATGAGGTGGCTGT 149237 Query 97343 TTGC 97346 ||| Sbjct 149236 CTGC 149233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056532186880