Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq14 100 2e-16 seq52 84.2 2e-11 >seq14 Length=1021207 Score = 100 bits (110), Expect = 2e-16 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||||||||||| ||||||||||| || | | | || || ||||||| ||||| Sbjct 859578 TGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTG-CGACCGTCCTCGAGCTG 859636 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || |||| || ||||| || || || | || ||||||||| || || Sbjct 859637 CTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTT 859696 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||||| | | || |||||||| | || || ||| | || ||||| || || Sbjct 859697 CGACTTGACGTTGTCG--ATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCA 859754 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGTC 48732 |||||||| || || || ||||||||| |||| Sbjct 859755 GTGAGAGTCTTGACGAAGATCTGCATCTTGTC 859786 >seq52 Length=261245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||||||||||| || |||||||| || | | || |||| || || || Sbjct 16367 ATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTG 16426 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||| || || | || ||||||||| || || Sbjct 16427 CTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTT 16486 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| ||| |||||||| ||| | || || || || || || Sbjct 16487 GGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 16546 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 16547 GAGGGTCTTGACGAAGATCTGCAT 16570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249721408288