Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15 159 4e-34 >seq15 Length=993015 Score = 159 bits (176), Expect = 4e-34 Identities = 378/568 (67%), Gaps = 10/568 (2%) Strand=Plus/Plus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || ||||| ||| ||| ||||||||||| | ||| | ||||||||| Sbjct 219771 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAAATGAGTTCGTTGGAG 219830 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || |||||||| || |||||||| || ||||| || ||||| || || | ||| Sbjct 219831 AAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCG 219890 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 ||||| || || || || || || ||||||||||| | || | || | || Sbjct 219891 CTGAAGAAGATACCCTCAACGGCGGCGAAGGCAATAAGACGCTGGGC-GAAGGTGGACT- 219948 Query 32832 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 || ||| ||||| | ||||||| ||||||||||| | ||||| || |||| Sbjct 219949 TCTTGTCGGCAATCCAGTGCAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 220008 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | |||||||| ||||||| | || | | || || | || || ||||| | | Sbjct 220009 CAATAGCATTGAAGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGA 220068 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 || ||| | || || || ||||| || || || || || ||||||||||||| | Sbjct 220069 GAGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGG 220128 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 |||| | ||||| || || | ||||||| || | | ||||| || || || |||| Sbjct 220129 CCTCTGGGATCTGAACCTCACCAGAAAATCGCTCGACAAGGTTTTCGTTGACAATGCCGT 220188 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA--- 33123 | || || || || || | | || || || | || ||||| ||| Sbjct 220189 CGGATGCGGCGAAGAAGGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCATTTAGGC 220248 Query 33124 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 33183 | || ||||||| | || ||| || |||| ||| | || || | ||||| || || | Sbjct 220249 GGTTGCTCCAATCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAGGAAG 220308 Query 33184 CCTCTGCCTTTTTATACATATTCCAGAT 33211 | || ||| || ||||| | |||||| Sbjct 220309 CTTCGTGCTTCTTGTACATCTGCCAGAT 220336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629718924800