Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq14 102 7e-17 seq25 87.8 2e-12 >seq14 Length=1021207 Score = 102 bits (112), Expect = 7e-17 Identities = 148/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || | ||||| | || |||||||| || Sbjct 859261 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACGATCACTCTTGAGGTGGAGTCTTCG 859202 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| || | || | || ||||| ||||| || || || || Sbjct 859201 GACACGATCGACAACGTCA---AATCCAAGATCCAG-GACAAGGAAGGAATCCCGCCCGA 859146 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || |||| ||||| || || || || || |||| || || || |||| || Sbjct 859145 CCAACAACGACTTATCTTTGCGGGTAAGCAGTTGGAGGATGGCCGAACACTGAGCGACTA 859086 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||||||||| || || || || || || Sbjct 859085 CAATATTCAGAAGGAGTCAACTCTGCA 859059 >seq25 Length=676740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | || || || | ||||| |||| |||||||| || ||||| ||| Sbjct 267063 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 267122 Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || || ||| || ||| ||||| || || ||||| || ||||||||||| Sbjct 267123 GA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAGCGTC 267180 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | || || |||||||| ||| | || || | || ||| | ||| ||||| || || | Sbjct 267181 TGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAACATCCAGA 267240 Query 25186 AAGAATCCACGCTACA 25201 | || ||||| || || Sbjct 267241 AGGAGTCCACCCTCCA 267256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326479018720