Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq14 116 3e-21 seq52 102 7e-17 seq25 102 7e-17 >seq14 Length=1021207 Score = 116 bits (128), Expect = 3e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || ||| | || || || || |||||||||| || ||| || Sbjct 859783 AAGATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAATCC 859724 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | ||| | |||| || || || ||||||||||||||||| ||||| Sbjct 859723 TCGGATACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGAC 859664 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| || | || || || || || ||| | ||||| ||||| | ||||| ||| Sbjct 859663 CAACAGCGATTGATTTTCGCTGGAAAGCAGCTCGAGGACGGTCGCACTCTTTCCGACTAC 859604 Query 22396 AACATTCAAAAAGA 22409 |||||||| || || Sbjct 859603 AACATTCAGAAGGA 859590 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || || | || || ||||| ||| | || Sbjct 859033 ATGCAGATTTTCGTCAAGACATTGACGGGAAAGACTATTACCCTAGAAGTTGAATCTTCC 858974 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || ||||| |||||||| || ||||| || ||||| Sbjct 858973 GACACCATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 858914 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || ||| | || ||| |||||| | |||||||||| Sbjct 858913 CAACGTCTCATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTAAGCGATTACAAC 858854 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || || ||| | || | || ||||| Sbjct 858853 ATCCAGAAGGAGTCCACGCTCCACTTGGTTCTCCGTCTCCGTGGAGG 858807 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||||||||| || || | |||| ||| | ||| || | || Sbjct 859465 ACCGGAAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGTCG 859406 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| ||||| || || || || || | || || |||||||| Sbjct 859405 AAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAGCAGCGATTGATTTTCGCCGGCAAG 859346 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||| ||| | ||||| |||||||| || || ||||| || Sbjct 859345 CAGCTTGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAGGAATCGAC 859293 >seq52 Length=261245 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | | | Sbjct 16570 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 16511 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||||||||| ||||| || Sbjct 16510 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 16451 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | || || ||| || ||||||| |||||| Sbjct 16450 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACTCTCTCCGACTACAAC 16391 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||| | ||| Sbjct 16390 ATCCAGAAGGAGAGCACCCTTCAT 16367 >seq25 Length=676740 Score = 102 bits (112), Expect = 7e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || ||||| | |||| ||| | ||| || |||| Sbjct 267078 ACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGTCC 267137 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 267138 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAGCGTCTGATCTTCGCCGGCAAG 267197 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 || | ||||| ||| || | ||||| |||||||| || || || |||||| Sbjct 267198 CAACTTGAGGACGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACC 267251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726526754720