Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq14 187 5e-42 seq52 167 4e-36 seq25 154 3e-32 seq15 131 3e-25 >seq14 Length=1021207 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || || | |||||||| ||||||||||| || |||||||| |||||| Sbjct 858806 TCCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGCT 858865 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | |||||||| | |||||| || ||||| ||||| | ||| || || || || Sbjct 858866 TAAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGG 858925 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||||||||| |||||||| ||| ||| ||||||||||| | ||||| || Sbjct 858926 AATGCCTTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCAAC 858985 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | ||| || || |||||||| | ||||||||||| |||||||| Sbjct 858986 TTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACGAAAATCTGCAT 859033 Score = 154 bits (170), Expect = 3e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| || || || || || |||||||| || ||||| Sbjct 859263 CCACCGCGAAGACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAC 859322 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | || || ||||| || ||| Sbjct 859323 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 859382 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| | ||| || ||||||||||| | || || || Sbjct 859383 ATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCGATGGTGTCGGACGACTCGACC 859442 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 || | |||||||| ||||| || ||||||||||||| || Sbjct 859443 TCAAGAGTGATGGTCTTTCCGGTAAGGGTCTTGACGACTA 859482 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||| ||| || || ||||| || ||||| Sbjct 859554 CCACCACGCAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 859613 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | || ||||||||||| ||| Sbjct 859614 AGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGA 859673 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| |||||||| || | ||||| || Sbjct 859674 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGACC 859733 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| ||||||||||| |||||||| Sbjct 859734 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 859780 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | | || | ||| || || ||||| || || || || || ||| Sbjct 859035 CCACCACGAAGTCTGAGAACAAGGTGCAGAGTTGACTCCTTCTGAATATTGTAGTCGCTC 859094 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || |||||||| || || || || |||| |||||||||||| || Sbjct 859095 AGTGTTCGGCCATCCTCCAACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGG 859154 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| | |||||| ||||| ||||| | || || || Sbjct 859155 ATTCCTTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATCGTGTCCGAAGACTCCACC 859214 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || ||||||||||| ||||| || ||||| Sbjct 859215 TCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 859261 >seq52 Length=261245 Score = 167 bits (184), Expect = 4e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || ||| ||| || |||||||| || |||||| Sbjct 16344 CCACCACGGAGGCGGAGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 16403 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| |||||||| || |||| || |||||||| ||| Sbjct 16404 AGAGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGA 16463 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || |||||||| || ||||| | |||||| ||||||||||| ||| || || || Sbjct 16464 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTC-GCTAGACTCCAC 16522 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||||||||| |||||||| || Sbjct 16523 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 16573 >seq25 Length=676740 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||| || |||||||| || ||||| Sbjct 267280 CCACCACGGAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 267221 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | ||||||||||| ||| Sbjct 267220 AGAGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGA 267161 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 267160 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 267101 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || | |||||| || || |||||||||||||| ||||| Sbjct 267100 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 267063 >seq15 Length=993015 Score = 131 bits (144), Expect = 3e-25 Identities = 313/471 (66%), Gaps = 8/471 (2%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 219476 CATGACACCGGCCTTCTGGTAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACC 219535 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||||| ||| |||||| ||||| |||||||| || || || ||| | || Sbjct 219536 CAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTGGTGGAGCGGTACACCTTCTCATTGCC 219595 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | |||||| || ||||||||||||||||| |||| |||| | ||| Sbjct 219596 GAGGGCCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTT 219655 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | | | |||||| | || || | ||| |||| || ||| ||| || Sbjct 219656 CATGCCTAGTAGGGCGCAGGGCAAAGCCTCCGTCAGGAACTCCTGCTCAATGGTGACGGC 219715 Query 10175 TTCCTCGACGATGCTCTTTACCACGTC----AAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || || ||| ||| |||||||| ||||| | ||||| ||| | || Sbjct 219716 ATCGGTGATGATCTTCTCGACCACGTCCTTGCCGGGAC-GGTTGTT---GAGGTGGGAGA 219771 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 |||| || | || | ||| || |||||||| || |||| |||||||| | Sbjct 219772 ACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAAATGAGTTCGTTGGAGA 219831 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 | |||||||||||| || || || || |||||||| |||| ||| | ||| Sbjct 219832 AGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCGC 219891 Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 ||| | | |||||| ||| | |||| | || |||| ||||||| Sbjct 219892 TGAAGAAGATACCCTCAACGGCGGCGAAGGCAATAAGACGCTGGGCGAAGG 219942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619082159360