Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq15 389 7e-103 seq51 255 1e-62 >seq15 Length=993015 Score = 389 bits (430), Expect = 7e-103 Identities = 612/858 (71%), Gaps = 24/858 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGG-CGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358 |||||| |||||||||||| || || | ||| |||||| |||||||||||||| || Sbjct 220336 ATCTGGCAGATGTACAAGAAGCACGAAGCT-TCCTTCTGGACTGCCGAGGAGATTGATCT 220278 Query 42359 GGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCA 42414 ||||||| | | | | |||| || | || | || |||| ||||| ||| || Sbjct 220277 ATCCAAGGAT-CTCCACGATTGGAGCAACCGCCTAAATGACGACGAGAAGTTCTTCATCT 220219 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCC-ACC 42473 |||| || |||||||||||||| || |||||||| ||||| || ||||| | | | | Sbjct 220218 CCCACATTCTCGCCTTCTTCGCCGCATCCGACGGCATTGTCAACGAAAACCTTGTCGAGC 220159 Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533 || || ||||| ||| | ||||| || |||||||||||||||||||| Sbjct 220158 GATTTTCTGGT-GAGGTTCAGATCCCAGAGGCCCGATGCTTCTACGGCTTCCAGATCATG 220100 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGAT 42590 || |||||| | ||||| ||| |||| | || |||| |||| |||||| ||| Sbjct 220099 ATGGAGAACATCCACTCCGAGACGTACTCT---CTCCTCATTGACACCTACATCAAGGAG 220043 Query 42591 CCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAG 42650 || | | || | || ||||| || || ||||| || || |||||| |||||| Sbjct 220042 CCTGCCCAGAAGACACATCTCTTCAATGCTATTGAGACCATTCCTTGCATCCGCAAGAAG 219983 Query 42651 GCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGT 42709 || |||||||| || ||||||| | | | || | | || |||| | || | || | Sbjct 219982 GCCGACTGGGCTCTGCACTGGATTGCC-GACAAGAAGTCCACCTTCGCCCAGCGTCTTAT 219924 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 ||||| ||||||| ||||| ||||||||| || |||||||| |||||||||||||| Sbjct 219923 TGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGAGCCTTCGCTTCCATCTTCTGGCT 219864 Query 42770 CAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 |||| || | ||| |||||||| || |||||||| ||||||||||| | |||| Sbjct 219863 CAAGAAGCGTG-GTCTTATGCCCGGTCTGACCTTCTCCAACGAACTCATTTCGCGTGACG 219805 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| ||||| | ||||| |||||||| |||||||| |||||||| || ||| Sbjct 219804 AGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTC---CCACCTCAACAACCGTCCCG 219748 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 ||||| |||| | |||||||| || ||||| || ||| |||||||||| | Sbjct 219747 GCAAGGACGTGGTCGAGAAGATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGA 219688 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 || || | ||||| |||| | ||||||||| | |||||||| |||||||| Sbjct 219687 CGGAGGCTTTGCCCTGCGCCCTACTAGGCATGAACGCCAACCTCATGAAGCAGTACATCG 219628 Query 43009 AGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCG 43067 ||| ||||||||||| || || ||| | || | || | | ||| | | | Sbjct 219627 AGTTCGTCGCCGACCGCCTGCTGGTGGCCCTCGGCAATGAGAAG-GTGTACCGCTCCACC 219569 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 ||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| Sbjct 219568 AACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAG 219509 Query 43128 CGCGTCGCCGACTACCAG 43145 ||||| | || |||||| Sbjct 219508 CGCGTTGGTGATTACCAG 219491 >seq51 Length=278824 Score = 255 bits (282), Expect = 1e-62 Identities = 875/1354 (65%), Gaps = 29/1354 (2%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||| ||||| |||| || || Sbjct 148648 GTTAACGACCTGGAACTCGCCAGCGAGGACACGGCGAGAGTAGATGTTGGAAGTGTAAGG 148707 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||| ||||| ||||| | ||||| || || ||||| || | || Sbjct 148708 CTCGAAGCACTCATTGTTACCCAGGATCTGGGATGTGCTGGCTGTGGGCATAGGGGCGAC 148767 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || || ||||| | ||| || | | ||| | |||| | |||||||||| Sbjct 148768 CAACAAGCTGTTGCGCACACCATTTTGTTTGATTTGCTCCTTGAGGCTGGTCCAGTCCCA 148827 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | |||| || ||| ||||||||| | || || | |||| Sbjct 148828 AAGATCCGATGGGG---------TGACATTCCACATGTCGTATTGAAGGATGCCCTGCGA 148878 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 |||||| || |||||||| | ||| || || || || || | || | | | Sbjct 148879 GACGGGAGAACCTTCGTAGGTAGAGTAAGGGCCTTCAACCTTAGCAATCTCCATGGACGC 148938 Query 244390 -GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-TG 244447 ||| ||| |||| | |||||| |||||||||||| |||||||| | | |||| || Sbjct 148939 AGTCAAGG-CGGCATGGTAGATCGTCTCGAAGATCTGCTTGTTCAATTGTCTAGCCTCTG 148997 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 || | ||||| || | || || ||| ||| || || ||||| || || | | Sbjct 148998 GCG-ACTCAAAGGGCATACGCAATGCCAAGAATGTGTCAGCAAGACCCTGAACACCAAGG 149056 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 || ||||| | ||||||| ||||| | ||| || || ||||||||| | ||| | Sbjct 149057 CCAATGGGACGGTGTCGCATGTTGCTGTTGCGGGCCTCTGGGACGGGGTAATAATTGACA 149116 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 || || | |||| | ||| | || | || || || || | ||| ||| Sbjct 149117 TCAATGATTCTGTTCAAATTGTGAACGACGACTTGGGTAACCTCATGCAACTTCTGGAAG 149176 Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687 || || || | ||| | || || | || || | | |||| | Sbjct 149177 TCATA-----AGTG--CCTTCGTTATAGTCA-----ACGAAGGAGGGCAACGCGAGGGAA 149224 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 || | ||||||||| |||||||| || | | || ||||| || ||||||||||| || Sbjct 149225 GCTAAGTTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCGATGATCTCGGTGCAAAGA 149284 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || || || || || | || ||||| |||| ||||||| |||||| Sbjct 149285 TTCGAGCTGCGAATAGTACCAAGATTCTTCTGATTACTCTTGCGGTTGCAGTGATCCTTG 149344 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || ||||||||||| || ||||| ||| || |||| | | || ||| || | | Sbjct 149345 TAAAGCATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCACAGCTTC 149404 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 |||||| | | || ||| ||| | |||||||| ||||| |||||||||||| Sbjct 149405 TGAGCCTTAATCTTCTGGCG-GCCGCGACCCTCTGCTTCGTACTTCTCGTACAGGGCCTC 149463 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 |||||| ||| | || || |||| || ||||| || |||||||| |||| Sbjct 149464 GAACTCATCGCCATAAACGTCAGCTAGACCAGGGCATTCGTTAGGACACATGAGGGTCCA 149523 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 ||| || | || || | || ||||||||| || ||||||||||| ||| ||||||| Sbjct 149524 CTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAGCCAGGAAGAG 149583 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 || | || | || ||| |||| |||||| | || || | || ||||| || Sbjct 149584 ATCGCGGGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCAAAAAC 149643 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 || |||||| ||||| | |||| |||| || || || | ||||||||| ||||| Sbjct 149644 ATCCGAGTGCCAAGGCTCGAGATAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTG 149703 Query 245167 GTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 || || ||| | | | ||||||| || || | || || |||||||| ||| Sbjct 149704 ATCTACGTATCTTGCAGTG-TTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGG 149762 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTA 245285 |||||| ||||| ||||| | ||| | | | || | | ||| | || | Sbjct 149763 TGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGAATGTTGAGACCAA 149822 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 || ||||| ||||||||| | ||| ||| |||||| |||||| || ||||| | Sbjct 149823 TACCACCGGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCAA 149882 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 ||||||| ||||||| || || ||||| || || ||||||| || ||| | | | Sbjct 149883 TGCTGTCGTCTTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTTCCAG 149942 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||||| ||||| ||| || || || ||||| Sbjct 149943 CATTGAAGAGAGTTGGGGAAGCATGAGTGAAGTA 149976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335800378880