Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq14 100 3e-16 seq52 89.7 5e-13 >seq14 Length=1021207 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || || |||| |||||||| || || |||||||| || | Sbjct 859262 ACCACCGCGAAGACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGA 859321 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || ||||||||||||||||| |||| | ||||||||||| ||||| Sbjct 859322 CAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGG 859381 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || ||| ||| || | || || | || || Sbjct 859382 AATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCGATGGTGTCGGACGACTCGAC 859441 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 || | ||| | |||||| ||||| | || || |||| Sbjct 859442 CTCAAGAGTGATGGTCTTTCCGGTAAGGGTCTTGACGA 859479 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | | ||||| |||| || |||||||| || || || Sbjct 859590 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAA 859649 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||| |||||||||||||| || || || || || || || ||| || Sbjct 859650 ATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 859709 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| || || || || | ||| | ||||||||| || | ||| || ||| Sbjct 859710 TCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACG 859769 Query 64433 AAAATTTGCATTTT 64446 || || ||||| || Sbjct 859770 AAGATCTGCATCTT 859783 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||| || || || || ||||||||||| | |||||| | ||||| |||||||| || Sbjct 858836 CGTGGACTCCTTCTGGATGTTGTAATCGCTTAAGGTGCGACCATCTTCCAGCTGCTTACC 858895 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 || | ||||| || ||||| || |||||||| ||||| || || || || || ||| Sbjct 858896 AGCGAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGCTCTT 858955 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | || || | || ||||||| || | ||||| || ||||| || Sbjct 858956 CACGTTGTCGATGGTGTCGGAAGATTCAACTTCTAGGGTAATAGTCTTTCCCGTCAATGT 859015 Query 64426 TTTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 859016 CTTGACGAAAATCTGCAT 859033 >seq52 Length=261245 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || |||||||| || | || || || ||||| Sbjct 16359 AGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 16418 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||||||||| | || || |||||||||||||| ||||| || || || || Sbjct 16419 TCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 16478 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | | ||||| || | || | ||| Sbjct 16479 TGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTC 16538 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || ||||| || ||||| Sbjct 16539 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 16570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643001278720