Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq52 104 2e-17 seq25 98.7 1e-15 seq15 98.7 1e-15 seq14 96.9 3e-15 >seq52 Length=261245 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | |||||| ||| |||||||| || |||| | Sbjct 16379 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAA 16438 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || ||||| ||||| || || ||||| || ||||| ||| || || | ||| Sbjct 16439 GATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 16498 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||||||| | ||||||||||| | || | || || || || || || || | Sbjct 16499 G-TCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 16557 Query 138602 CAAAAATCTGCATG 138615 | || ||||||||| Sbjct 16558 CGAAGATCTGCATG 16571 >seq25 Length=676740 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || |||||| ||||| || |||| Sbjct 267247 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTGCTTGCCGGCG 267188 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||||||||| || || || || || ||||| ||| || || | | Sbjct 267187 AAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 267128 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||||| ||||||||||||| || | || || || || || || || Sbjct 267127 TTGT-CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTT 267069 Query 138600 TACAAA 138605 || || Sbjct 267068 CACGAA 267063 >seq15 Length=993015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 344/536 (64%), Gaps = 21/536 (4%) Strand=Plus/Minus Query 52311 AATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC 52370 ||||| | ||| | | || ||| | ||||| ||||| | ||||| || | ||||| Sbjct 220018 AATGCTATTGAGACCATTCCTTGCATCCGCAAGAAGGCCGACTGGGCTCTGCACTGGATT 219959 Query 52371 GAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTG 52430 | | | | |||| | ||| |||| | | ||||||||| || ||||| | Sbjct 219958 GCCGACAAGAAGTCCACCTTCGCCCAGCGTCTTATTGCCTTCGCCGCCGTTGAGGGTATC 219899 Query 52431 tttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGC 52490 || || ||| ||| || ||||||| | | || | | || | |||||||| Sbjct 219898 TTCTTCAGCGGAGCCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGT 219839 Query 52491 CTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC 52550 ||||| ||| |||||| | || ||||| ||||| || |||||||| ||||| || ||| Sbjct 219838 CTGACCTTCTCCAACGAACTCATTTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGC 219779 Query 52551 CTC---TACTACAAG----ACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAG 52603 || | || | | || ||| | | || |||| | || || Sbjct 219778 CTGCTGTTCTCCCACCTCAACAACCGTCCCGGCAA----------GGACGTGGTCGAGAA 219729 Query 52604 CATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGA 52663 || ||| || || || | || || ||||||| | |||| || |||| || Sbjct 219728 GATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACGGAGGCTTTGCCCTGCGC 219669 Query 52664 GCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCT 52723 || || ||||||||||| | |||| ||||||||||||| || || || || || Sbjct 219668 CCTACTAGGCATGAACGCCAACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCT 219609 Query 52724 GTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCG--CAATCCGTTTGAGTTTATG 52781 | ||||| ||||| | ||| | | ||||| ||| || || || |||||| Sbjct 219608 GCTGGTGGCCCTCGGCAATGAGAAGGTGTAC--CGCTCCACCAACCCCTTCGACTTTATG 219551 Query 52782 AACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | ||||| || || | |||||||||||||| ||||||||||| || || || || Sbjct 219550 GAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGATTA 219495 >seq14 Length=1021207 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||| ||||||||||||| || || ||||| | || ||||| | Sbjct 859066 TTGACTCCTTCTGAATATTGTAGTCGCTCAGTGTTCGGCCATCCTCCAACTGCTTACCCG 859125 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| || || |||||||| || || || ||||| ||||| ||| || ||| | Sbjct 859126 CAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATCTTGGATTTGA 859185 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||| | ||||||||||| | || | ||| || || || || || | Sbjct 859186 CGTTGTCGATCGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCT 859245 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 859246 TCACGAAGATTTGCAT 859261 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | ||| || ||||||||| || || || | | Sbjct 859589 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAA 859648 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 || | ||||||||||| ||||| ||||| || ||||| ||| || || | | Sbjct 859649 AATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTT 859708 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||| || | || || ||||| | || | || || ||||| ||||| || || Sbjct 859709 GTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 859768 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 859769 GAAGATCTGCAT 859780 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | |||||||| || |||||||| ||||| Sbjct 858807 CCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGCTT 858866 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || ||||| | |||| ||||| || || |||||||| Sbjct 858867 AAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGGA 858926 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | |||| | | |||||||| || || | Sbjct 858927 ATGCCTTCCTTGTCC-TGAATCTTGCTCTTCACGTTGT-CGATGGTGTCGGAAGATTCAA 858984 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || || |||| || || || ||||||||||| Sbjct 858985 CTTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACGAAAATCTGCAT 859033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260613455360