Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq15 147 2e-30 seq14 120 3e-22 seq52 93.3 4e-14 seq25 82.4 7e-11 >seq15 Length=993015 Score = 147 bits (162), Expect = 2e-30 Identities = 348/525 (66%), Gaps = 17/525 (3%) Strand=Plus/Minus Query 47061 GAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAA 47120 |||| ||| || ||| | |||| |||||||| ||||| || | | |||| || | Sbjct 220009 GAGACCATTCCTTGCATCCGCAAGAAGGCCGACTGGGCTCTGCACTGGATTGCCGACAAG 219950 Query 47121 AACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCG 47180 || ||| | ||| | ||| | || || |||||| ||| ||||| |||||||| Sbjct 219949 AAGTCCACCTTCGCCCAGCGTCTTATTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGC 219890 Query 47181 GGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTT 47240 || ||| || | || || | | || | || |||||||||| || || || Sbjct 219889 GGAGCCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTC 219830 Query 47241 AGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TAC 47297 |||||| || || ||| | ||||| || ||||||||| |||| ||||| || | | Sbjct 219829 TCCAACGAACTCATTTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTC 219770 Query 47298 TACAAC----ACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGC 47353 | | || || | ||| || ||||||| ||| | || | | Sbjct 219769 TCCCACCTCAACAACCGTCCCGGCAA----GGACGTG------GTCGAGAAGATCATCAC 219720 Query 47354 CGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGG 47413 ||| |||||| |||||||| |||||| | | |||||| ||||| | || | || Sbjct 219719 CGATGCCGTCACCATTGAGCAGGAGTTCCTGACGGAGGCTTTGCCCTGCGCCCTACTAGG 219660 Query 47414 AATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA 47473 |||||||| | | |||| |||||||||| || ||||||||||||||||| || Sbjct 219659 CATGAACGCCAACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGC 219600 Query 47474 GCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTC 47533 || || ||| | |||| | || || || ||||| |||||| | ||||| || Sbjct 219599 CCTCGGCAATGAGAAGGTGTACCGCTCCACCAACCCCTTCGACTTTATGGAGAACATCTC 219540 Query 47534 GCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || | |||||||||||||| |||||||||||||| || || || Sbjct 219539 CCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGATTA 219495 >seq14 Length=1021207 Score = 120 bits (132), Expect = 3e-22 Identities = 170/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| || || | || | ||||| || | ||| ||||| || || || ||||| Sbjct 858801 TACTG-TCCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTA 858859 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||||| | |||||| ||| || ||||| || |||||| |||| | || |||||||| Sbjct 858860 ATCGCTTAAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATC 858919 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||||| ||||| ||||||||| || || ||| | ||||| ||| |||||| | | Sbjct 858920 CGGAGGAATGCCTTCCTTGTCCTGAATCTTGCTCTTCACGTTGT-CGATGGTGTCGGAAG 858978 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| | ||| | || || || |||| || || || ||||||||||| Sbjct 858979 ATTCAACTTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACGAAAATCTGCAT 859033 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| ||| | |||||| || || ||||| ||||||||| | Sbjct 859589 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAA 859648 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||||||||||| || |||||||| || |||||||||||| ||| ||| ||||| ||| Sbjct 859649 AATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTT 859708 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||| |||| ||||| || | || | || ||||| || ||||| || | Sbjct 859709 G-TCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGA 859767 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 859768 CGAAGATCTGCAT 859780 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||||||||| |||| || || || ||| || | ||| || || Sbjct 859065 GTTGACTCCTTCTGAATATTGTAGTCGCTCAGTGTTCGGCCATCCTCCAACTGCTTACCC 859124 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||| || || ||||| || || || ||||||||| ||| || ||| Sbjct 859125 GCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATCTTGGATTTG 859184 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| | ||| || || | || | ||| |||||||| || || Sbjct 859185 ACGTTG-TCGATCGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGT 859243 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 859244 CTTCACGAAGATTTGCAT 859261 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| || || || ||| || ||||| || || Sbjct 859293 GTCGATTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCAAGCTGCTTGCCG 859352 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || ||||| |||||||||||||| ||| ||| ||| Sbjct 859353 GCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTCGACTTA 859412 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | || | || || ||||| || || Sbjct 859413 ACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTTCCGGTAAGGGTC 859472 Query 127097 TTTAC 127101 || || Sbjct 859473 TTGAC 859477 >seq52 Length=261245 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || || || ||| |||||| ||||||||| ||||| || || ||||||||| Sbjct 16416 TCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTG 16475 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| || ||| || || | ||| | Sbjct 16476 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATA 16535 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || || || || ||||||||| Sbjct 16536 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 16571 >seq25 Length=676740 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | || || || || || || || || Sbjct 267250 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTGCTTGCCG 267191 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||| || ||||| || ||||||||||||||| ||| || |||| Sbjct 267190 GCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 267131 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||| || |||| ||| | || ||||| || || || Sbjct 267130 ACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTC 267071 Query 127097 TTTACAAA 127104 || || || Sbjct 267070 TTCACGAA 267063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499088197120