Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq52 156 5e-33 seq14 141 1e-28 seq25 127 2e-24 >seq52 Length=261245 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | || |||||||| ||||| ||||||||||| ||||| || |||| ||| Sbjct 16362 ACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCG 16421 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||||||||| |||| ||||||||||||| || | | |||||||||| | Sbjct 16422 AGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGG 16481 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | |||||||| || ||||| || | ||||| || ||| Sbjct 16482 ATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTG 16541 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || ||||| ||||| Sbjct 16542 CCCGTGAGGGTCTTGACGAAGATCTGCAT 16570 >seq14 Length=1021207 Score = 141 bits (156), Expect = 1e-28 Identities = 154/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || ||||||||||| |||||||| |||| ||||||||||| || Sbjct 859584 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCA 859643 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| ||||| ||||| ||||||| || | | |||||||||| ||||||| |||| Sbjct 859644 GCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 859703 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | || || ||||| || || | |||||||| ||||| || || || Sbjct 859704 A-CGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGT 859762 Query 46576 TTTAACAAAGATTTGCATTTTG 46597 || || ||||| ||||| ||| Sbjct 859763 CTTGACGAAGATCTGCATCTTG 859784 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || || || | || || ||||||||||||||||| Sbjct 859299 TCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAA 859358 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | || ||||||||| ||||||| ||| | | Sbjct 859359 ATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTG 859418 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| || || || | |||||||| || || || || || || || Sbjct 859419 TCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTTCCGGTAAGGGTCTTGAC 859477 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||||||| || || || | || || | |||||| || || || Sbjct 859070 CTCCTTCTGAATATTGTAGTCGCTCAGTGTTCGGCCATCCTCCAACTGCTTACCCGCAAA 859129 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||||| ||| | | ||||||||| |||||| |||| ||| Sbjct 859130 GATAAGTCGTTGTTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATCTTGGATTTGA-CGT 859188 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || ||||| || || || || | Sbjct 859189 TGTCGATCGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTCA 859248 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 859249 CGAAGATTTGCAT 859261 >seq25 Length=676740 Score = 127 bits (140), Expect = 2e-24 Identities = 146/195 (75%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || |||| || || |||||||||||||| Sbjct 267245 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAA 267186 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||| ||||||| || | || |||||||||| |||||| ||||| | Sbjct 267185 GATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 267126 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||||| || | ||||| || |||||||| || || || || Sbjct 267125 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCAC 267066 Query 46582 AAAGAT-TTGCATTT 46595 ||| | ||| |||| Sbjct 267065 GAAGCTATTGAATTT 267051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236365141760