Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15 291 8e-74 seq52 122 9e-23 seq25 116 4e-21 seq14 113 5e-20 >seq15 Length=993015 Score = 291 bits (322), Expect = 8e-74 Identities = 574/835 (69%), Gaps = 37/835 (4%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || ||| ||| ||| | |||||| || ||||||||| Sbjct 219510 TTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTG 219569 Query 132685 GCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | | ||| ||| |||||| || | || ||||| | |||||| |||||| Sbjct 219570 GTGGAGCGGTACACCTTCTCATTGCCGA---GGGCCACCAGCAGGCGGTCGGCGACGAAC 219626 Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTT 132799 |||||||| ||| |||| | || || | | | || || || |||| |||| || | Sbjct 219627 TCGATGTACTGCTTCATGAGGTTGGCGTTCATG-CCTAGTAGGGCGCAG-GGCAAAGCCT 219684 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT-TTCCCTAACGCGC--- 132855 | || || || ||||| |||| ||| || ||||||| ||| ||| | | | || Sbjct 219685 CCGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATCTTCTCGACCACGTCCT 219744 Query 132856 -GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAA 132914 |||| | ||| |||| | || ||||| || ||| || |||||| |||| Sbjct 219745 TGCCGGGA-CGGTTGTTG----AGGTGGGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAG 219799 Query 132915 GCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTT 132974 |||||||| | ||||||||||||||| ||| |||| |||||||| || || || || Sbjct 219800 ACCCTCGTCACGCGAAATGAGTTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 219859 Query 132975 TTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAA 133034 |||||||| || |||| ||||| || ||||||| ||||| ||||| ||||| Sbjct 219860 CTTGAGCCAGAAGATGGAAGCGAAGGCTCCGCTGAAGAAGATACCCTCAACGGCGGCGAA 219919 Query 133035 AGCCACCAGGCGCTCGCCGAACGTGG-CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATT 133093 || | || |||| | |||| |||| |||| ||| ||| |||||| |||| ||||| | Sbjct 219920 GGCAATAAGACGCTGGGCGAAGGTGGACTTC-TTGTCGGCAATCCAGTGCAGAGCCCAGT 219978 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153 ||||||| | || ||| || || || || || || || || | | | | |||| Sbjct 219979 CGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATAGCATTGAAGAGA-----TGTGTCTT 220033 Query 133154 CCGAGGAACGC------ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207 | | || | || | ||||||||| |||||| || ||| | || ||||| | || Sbjct 220034 CTG-GGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGAGAGTACGTCTCGGAGTGGATGT 220092 Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267 ||||||| ||| || |||||||| ||||| || ||||| | ||| || || || Sbjct 220093 TCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCTGGGATCTGAACCTCACCAG 220152 Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327 || |||||||| || ||||||||||| ||||||||| |||||||| ||||| || | Sbjct 220153 AAAATCGCTCGACAAGGTTTTCGTTGACAATGCCGTCGGATGCGGCGAAGAAGGCGAGAA 220212 Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCT 133384 ||| |||||| ||||| ||| || | ||| | ||| ||| | |||| Sbjct 220213 TGTGGGAGATGAAGAACTTCTCGTCGTCATTTAGGCGGTTGCTCCAATCGTGGAGATCCT 220272 Query 133385 TGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 |||| || || | ||||||| | ||||| || || || ||| || |||||||| Sbjct 220273 TGGATAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCTTCGTGCTTCTTGTACAT 220327 >seq52 Length=261245 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | | | Sbjct 16570 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 16511 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| |||||| ||||||| Sbjct 16510 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 16451 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| || || || |||| || || ||| |||||||||| Sbjct 16450 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACTCTCTCCGACTACAAC 16391 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||| || || ||| | || || || Sbjct 16390 ATCCAGAAGGAGAGC-ACCCTTCATCTCGTCCTCCG 16356 >seq25 Length=676740 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| || |||||| |||| || ||| | |||||| | | Sbjct 267063 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 267122 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| ||||||||||||| || Sbjct 267123 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAGCGTCTG 267182 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| || || || |||| || || || ||||||||||||||| ||| Sbjct 267183 ATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAACATCCAGAAG 267242 Query 38433 GA 38434 || Sbjct 267243 GA 267244 >seq14 Length=1021207 Score = 113 bits (124), Expect = 5e-20 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| || Sbjct 859783 AAGATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAATCC 859724 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | | |||| | || || |||| ||||| ||||| ||||| |||| Sbjct 859723 TCGGATACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGA 859665 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| | |||| ||| || || ||||| || |||| ||||| || |||||| Sbjct 859664 CCAACAGCGATTGATTTTCGCTGGAAAGCAGCTCGAGGACGGTCGCACTCTTTCCGACTA 859605 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || ||||| ||| || || || | || || ||| || | || ||| Sbjct 859604 CAACATTCAGAAGGAGAGC-ACCCTCCACCTTGTCCTCCGTCTGCGTGGTGGC 859553 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| || || || || || || |||||||| | || |||||| | |||||| | Sbjct 859482 TAGTCGTCAAGACCCTTACCGGAAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCA 859423 Query 38311 TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | | | |||| || |||| ||||| ||||| ||||| | ||||| ||||| Sbjct 859422 TCGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAGCAGCGAT 859363 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | |||| ||| ||||| ||||| || || | || ||||| ||||||||||||||| | Sbjct 859362 TGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGA 859303 Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||| || || | || || ||| Sbjct 859302 AGGAATCGACTCTTCACCTCGTCCTCCGT 859274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || || || ||| | || || || | || Sbjct 859033 ATGCAGATTTTCGTCAAGACATTGACGGGAAAGACTATTACCCTAGAAGTTGAATCTTCC 858974 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || || | ||||| || || ||||| | || | Sbjct 858973 GACACCATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 858916 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || ||||| | ||| || || |||||||| || | |||||| | | ||| |||| Sbjct 858915 AGCAACGTCTCATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTAAGCGATTACA 858856 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| | ||||| || ||||| || ||| Sbjct 858855 ACATCCAGAAGGAGTCCACGCTCCACTTGGTTCTCCGT 858818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170999377920