Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq14 100 2e-16 seq52 93.3 3e-14 >seq14 Length=1021207 Score = 100 bits (110), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 18/209 (9%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||||||||| ||||| ||||| | || | || || ||||| ||||| Sbjct 859584 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCA 859643 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || | ||| || ||||| | || | ||||||||||| |||||| ||| Sbjct 859644 GCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 859703 Query 34905 ACG-----GATGCTATC----GATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCC 34955 ||| |||| |||| |||| || |||||| | || ||||| || || Sbjct 859704 ACGTTGTCGATGGTATCCGAGGATT---CGACCTCAAGA------GTGATGGTCTTGCCA 859754 Query 34956 GTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||||||| || ||||||||||| || Sbjct 859755 GTGAGAGTCTTGACGAAGATCTGCATCTT 859783 >seq52 Length=261245 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||||| || ||||| ||||| ||||| || || | || | || || || || Sbjct 16368 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGC 16427 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || ||||| || || ||||| |||||||| | || | ||||||||||| ||||| Sbjct 16428 TTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTG 16487 Query 34899 TGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCC 34954 ||||| || | ||||| || | | ||| || || | ||| || || || || Sbjct 16488 GACTTGAC--AT--TGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCC 16543 Query 34955 CGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| ||||| || ||||||||||| Sbjct 16544 CGTGAGGGTCTTGACGAAGATCTGCAT 16570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632460536064