Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq51 134 2e-26 >seq51 Length=278824 Score = 134 bits (148), Expect = 2e-26 Identities = 341/519 (66%), Gaps = 0/519 (0%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| || ||||| ||||| || | | ||| ||||| ||||| ||||||||||| | | Sbjct 149461 CTCGAACTCATCGCCATAAACGTCAGCTAGACCAGGGCATTCGTTAGGACACATGAGGGT 149520 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| || ||| || | || | |||| || | |||||| ||||| ||||| | || Sbjct 149521 CCACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAGCCAGGAA 149580 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | | | | ||| || |||||| ||| || ||| ||||| || || | Sbjct 149581 GAGATCGCGGGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCAAA 149640 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| | ||||| || || | ||| || || | |||| |||| || || || || Sbjct 149641 AACATCCGAGTGCCAAGGCTCGAGATAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACC 149700 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||||||| ||||| ||||| || || | || | || ||| || ||||| || || || Sbjct 149701 CTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGA 149760 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 | || || || || | ||| || ||| |||| | || ||| | ||| Sbjct 149761 GGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGAATGTTGAGACC 149820 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 |||||||| ||||| || || || | ||||| || ||||| ||||| || || || Sbjct 149821 AATACCACCGGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTC 149880 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 || || || ||| |||| | | || || ||| || | || | || ||||| Sbjct 149881 AATGCTGTCGTCTTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTTCC 149940 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTT 48643 | ||| || | ||||| || |||||| | || |||| Sbjct 149941 AGCATTGAAGAGAGTTGGGGAAGCATGAGTGAAGTATTT 149979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106776408320