Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq27 109 4e-18 seq40 93.3 3e-13 >seq27 Length=613129 Score = 109 bits (120), Expect = 4e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || |||||||| || ||||||||||| || ||||| || | || Sbjct 450997 ACTGTGCCCGCCTACTTCAATGACTCTCAGCGTCAAGCTACCAAGGATGCCGGTCAGATC 451056 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| ||||| || |||||| || | || || || ||||||||||||||||| ||||| Sbjct 451057 GCTGGTCTTAACGTCCTTCGTGTTGTGAACGAGCCCACTGCTGCTGCACTTGCGTATGGT 451116 Query 550529 CTTGATAA 550536 || || || Sbjct 451117 CTGGAGAA 451124 >seq40 Length=406905 Score = 93.3 bits (102), Expect = 3e-13 Identities = 248/377 (66%), Gaps = 3/377 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACA- 552268 || || ||||||||||| ||||| ||||||||| | || || ||||| || ||||| | Sbjct 182546 AACCCCGATGAGGCTGTCGCCTACGGTGCCGCAGTCCAGGCTGCTATCCTCTCTGGTGAC 182605 Query 552269 AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 | | | | || | || || | || | ||| | ||||| | || || ||||| ||| Sbjct 182606 ACCAGCTCCAAGTCGACCAACGAGATCCTGCTTCTCGATGTCGCCCCGCTGTCTCTCGGT 182665 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| ||||| |||||||| || ||| | || || |||||||| Sbjct 182666 ATCGAGACCGCTGGTGGTATGATGACTAAGCTCATCCCCCGCAACACCACTATTCCCACC 182725 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || || || || || || | || || || || ||| ||| |||||| | Sbjct 182726 AAGAAGTCGGAGGTCTTCTCCACTTTCTCCGACAACCAGCCTGGTGTGCTCATTCAAGTA 182785 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 | || || || | || ||| || || || || | || |||| || | | Sbjct 182786 TACGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTGCTCGGTAAGTTCGAGCTTACT 182845 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || || || || || || || || || || ||||| || || |||||| | |||||| Sbjct 182846 GGCATCCCGCCCGCACCCCGCGGTGTTCCTCAGATTGAGGTCACCTTCGATCTTGATGCC 182905 Query 552567 AATGGAATTTTGAATGT 552583 || || || |||| || Sbjct 182906 AACGGTATCATGAACGT 182922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029280769261120