Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq51 123 7e-23 seq1 114 4e-20 seq40 93.3 1e-13 >seq51 Length=278824 Score = 123 bits (136), Expect = 7e-23 Identities = 352/535 (66%), Gaps = 7/535 (1%) Strand=Plus/Plus Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 ||||| | ||| || ||||| || || || | ||| || || ||| | || ||| Sbjct 149600 TCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCAAAAACATCCGAGTGCCAAGGC 149659 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 || ||||| || || ||| |||| |||||| |||||||||||||| || | ||| Sbjct 149660 TCGAGATAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTACGTATCTTGCA 149719 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || ||||||||||||| |||||| || | ||| || || || ||||| || || || | Sbjct 149720 GTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTTAGTGCCAGCA 149779 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TT 156205 || | || |||| | || | ||||| | || ||||||||||| | |||| || Sbjct 149780 ATGTATGAGCCAGTAGCACGGATGCGGTGAATGTTGAGACCAATACCACC-GGCCATCTT 149838 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || || || ||| | || | | ||||| ||||| || |||| ||| Sbjct 149839 GGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCGTCTTTCAT 149898 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | || |||| || | || | | ||||||||||| ||||| || || || Sbjct 149899 GTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTTCCAGCATTGAAGAGAGTTGG 149958 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAG 156385 | |||||| | || || || ||||||| | ||| |||| | | ||||||| Sbjct 149959 GGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGACTTTCTCAAC 150018 Query 156386 ATTA-GACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 || | |||| | || | || || || | ||| ||| ||||| || | |||||||| Sbjct 150019 ATCATCACCCCAG-ATGCCGACAGCCACACGCATGATCATGTGCTGTGGTCTCTCTACAA 150077 Query 156445 TCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || | || | ||| ||||| | || |||||||| || || ||||| || Sbjct 150078 TCTTGTCGTCGAGCTTCAGTAGGTAAGATCGCTCCAGAGTCTTGAAGCCGAAGTA 150132 >seq1 Length=3254829 Score = 114 bits (126), Expect = 4e-20 Identities = 384/591 (65%), Gaps = 20/591 (3%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 ||||||||||| | | ||| | || || || ||||||| || | || | || || Sbjct 3004557 ATAAGACCACAGATTTCACAGATGTGAACTCTAAAAGCATCCGAGACCTCGAAGAGACGT 3004498 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 ||||| ||| | |||||||| | |||||| || ||||| |||||||| ||||| Sbjct 3004497 TCCTTGAGGAAAGAGGCGGCACCGTGAGCAATCATGCAGTCACGTTCCATTTCTCCGAAT 3004438 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||| ||||| | ||| | |||||| |||||||||| || | | || ||| Sbjct 3004437 CGGAGACCTCCATCCCTAGCACGACCCTCAACAGGCTGACGCGTCATGATCTGCACTGGA 3004378 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || | | |||| ||| |||| ||||||||| | |||||||||||| | | Sbjct 3004377 CCACGCGCTCTTGCATGTATCTTGTCATCCACCATATGCCTTAGACGCTGGTAGTAAGTA 3004318 Query 251647 GGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAAC 251702 || |||| ||| | ||||||||| |||| ||||| || ||| ||||||| Sbjct 3004317 GGTCCGAAGAACACCTGTGCTCGAAG---CTTGC-GACCAGTGTGACCGTGGTACATAAT 3004262 Query 251703 TTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAG---CAATATC--ACCA 251757 || ||| ||||| || ||| | | | | |||| | ||| | | | Sbjct 3004261 CTCAAACCCACGAGATTGGTATCCATG-----CTCACGCAGAAGGTTCGATACCGAATCG 3004207 Query 251758 ATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTG 251817 | | ||| | | | || ||| |||| || | | ||| || | | | |||||| Sbjct 3004206 ACCGTGACATCGGTGAAGGGCGTGGCGTCACCTTCCATTCCCTTTAGGGTTGAGACTTTG 3004147 Query 251818 CCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTG 251877 | | || ||| ||| || || ||||||||||| ||||| || || || ||| Sbjct 3004146 CTCAGTAGACACTCAATCAAGTGAGCAATAGTCATACGGGAAGGAATGGCGTGTGGGTTG 3004087 Query 251878 ATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-T 251936 ||||| | ||||| | || || |||||| ||||| | ||| | | ||| | Sbjct 3004086 ATGATTAAATCGGGAACGATGCCCTCGCGAGTGAAAGGCATGT-CTTCTTGGCGGTAAGT 3004028 Query 251937 GTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | ||||| ||||| || || |||||||||||| ||||| || || || Sbjct 3004027 GACACCAATGGTTCCTTTCTGACCGTGACGAGAAGCAAACTTGTCTCCGAT 3003977 >seq40 Length=406905 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| | || ||||||| | |||| |||||||||||||||||| |||| ||| |||| Sbjct 244322 GAAGCTGCGAAGCACCGTACGCGATCAAACAATCACGCTCCATTTCTCCGAGACGGAGAC 244263 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593 ||||||| | | | ||| || | ||| || ||||| || || | ||| ||| | Sbjct 244262 CACCATCCCTGGATCGACCTTCCGTAGGTTGGCGAGTAAGGATAGCTCGAGGGCCGCGAG 244203 Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 | || || |||||| | ||||| ||||| || ||||||||| | || ||| Sbjct 244202 AACGTGAGTGCATCTTATCTTGGACCATGTGCTTCAGCCGCTGGTAGTAGATCGGTCCGT 244143 Query 251654 TGAAGATG 251661 |||||||| Sbjct 244142 TGAAGATG 244135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812168993056