Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq15 141 1e-27 seq20 138 1e-26 seq5 111 2e-18 seq2 87.8 2e-11 >seq15 Length=993015 Score = 141 bits (156), Expect = 1e-27 Identities = 227/322 (70%), Gaps = 7/322 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||| |||||||||||||| | || ||||| Sbjct 219486 GCCTTCTGGTAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATG 219545 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||| ||| || ||||| | | | Sbjct 219546 TTCTCCATAAAGTCGAAGGGGTTGGTGGAGCGGTACACCTTCTCATTGCCGAGGGCCACC 219605 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||||||||| |||||||||||||| ||||||| |||||||||||| | Sbjct 219606 AGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCTAGT 219665 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || |||| | ||| ||| ||||| | ||| || |||||| ||| |||| Sbjct 219666 AGGGCGCAGGGCAAAGCCTCCGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATG 219725 Query 868931 ATCTGCCTGGGCACGTC--GGCCGAG-GGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 |||| | | |||||| |||| | | ||||||| | | | | | ||||||||| Sbjct 219726 ATCTTCTCGACCACGTCCTTGCCGGGACGGTTGTTGAGGTG---GGAGAACAGCAGGCAG 219782 Query 868988 GCAAAGTCGCAGTGCA-ACCCT 869008 || |||||| ||||| ||||| Sbjct 219783 GCGAAGTCGGTGTGCAGACCCT 219804 Score = 122 bits (134), Expect = 1e-21 Identities = 201/288 (70%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || || | ||||||| |||| || |||||||| || || ||||| Sbjct 219800 ACCCTCGTCACGCGAAATGAGTTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 219859 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| ||| || ||| ||||| ||||| |||||||| || Sbjct 219860 CTTGAGCCAGAAGATGGAAGCGAAGGCTCCGCTGAAGAAGATACCCTCAACGGCGGCGAA 219919 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGC 869355 | | || || |||| ||| |||||| || || ||||| | ||||| | || || Sbjct 219920 GGCAATAAGACGCTGGGCGAAGGTG--GA----CTTCTTGTCGGCAATCCAGTGCAGAGC 219973 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 |||||||||||| || | | | || | || || || || ||||| || ||| Sbjct 219974 CCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATAGCATTGAAGAGATGTGTCTT 220033 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| || ||||||| |||||||| || ||||| || || ||||| Sbjct 220034 CTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGAGAGTACGTCTC 220081 >seq20 Length=805568 Score = 138 bits (152), Expect = 1e-26 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||| |||||||||||| |||| | ||| |||| |||||| |||| |||||||||| Sbjct 347745 CCAACTATCTCGACATCAAGGCTCTCTTGGATGTTGGTTGCAAGACTGTTGCCAACATGA 347804 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| |||||||||||||||||||| || ||||||| | ||| Sbjct 347805 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACGTTCAACATCACGAACG 347855 >seq5 Length=1588943 Score = 111 bits (122), Expect = 2e-18 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 1574058 CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCG 1574117 || |||||||| ||||||||| | | ||||||||||| |||||| || | || |||| Sbjct 826280 CTTCCGCCCGGCCGCCACAAGATTGTGATCCTCGACGAAGCCGACAGCATGACCTCGGGA 826221 Query 1574118 GCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTG 1574177 |||||||| || || ||| || ||||| | || |||| ||||||||||| ||| | Sbjct 826220 GCCCAGCAAGCGCTACGGCGTACGATGGAGATCTACTCCAATACGACGCGCTTCGCCTTC 826161 Query 1574178 GCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 || || ||| |||| | | | ||||| |||| ||| || ||||||||||| || Sbjct 826160 GCATGTAACCAGTCGAACAAGATTATCGAACCCCTGCAATCCCGATGCGCCATTCTACG 826102 >seq2 Length=2464614 Score = 87.8 bits (96), Expect = 2e-11 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1852469 TGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAG 1852528 || |||| ||| || ||| | ||| ||||||||||| ||||||| |||||||| | Sbjct 1761278 TGCTCGATCAGTTCTATCGGGGCCTTCATGTTGTCGAGGTATGCGTGCAAGTCGGCAAGG 1761219 Query 1852529 AGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAG 1852588 || ||||||| | || ||||| ||||| | || || | |||| || | ||| ||| Sbjct 1761218 AGAATCTTGATGTGGCAACCGGCGTGGAGGAGTTCTGCGATCTTGACCATTGACACGAAG 1761159 Query 1852589 TAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATA 1852629 ||||| ||||| | || |||| |||||| ||||| || Sbjct 1761158 TAGCCGCAATGCGGCCTACCTGTCGTCGCCGTTCCCCAGTA 1761118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107115565371296