Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq15 152 8e-31 seq20 120 5e-21 seq5 113 7e-19 seq51 91.5 2e-12 >seq15 Length=993015 Score = 152 bits (168), Expect = 8e-31 Identities = 233/330 (71%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || || | ||||||| ||| || |||||||| || || ||||| Sbjct 219800 ACCCTCGTCACGCGAAATGAGTTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 219859 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| | ||| || ||| ||||| ||||| |||||||| || Sbjct 219860 CTTGAGCCAGAAGATGGAAGCGAAGGCTCCGCTGAAGAAGATACCCTCAACGGCGGCGAA 219919 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG---ATCCACTTCATCGC 794516 | | | || |||| ||| || ||| | | |||| || | ||||| | || || Sbjct 219920 GGCAATAAGACGCTGGGCGAAGGTG-----GACTTCTT-GTCGGCAATCCAGTGCAGAGC 219973 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| || | | | || | || || || || ||||| || ||| Sbjct 219974 CCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATAGCATTGAAGAGATGTGTCTT 220033 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | | || ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct 220034 CTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGAGAGTACGTCTCGGAGTGGATGTT 220093 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || |||||||||||| || ||||| Sbjct 220094 CTCCATCATGATCTGGAAGCCGTAGAAGCA 220123 Score = 145 bits (160), Expect = 1e-28 Identities = 232/329 (71%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || |||||| |||||| |||||||||||||| | | Sbjct 219478 TGACACCGGCCTTCTGGTAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCA 219537 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | |||| |||||| |||| Sbjct 219538 GGGAGATGTTCTCCATAAAGTCGAAGGGGTTGGTGGAGCGGTACACCTTCTCATTGCCGA 219597 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | |||||||||||||||||||| || |||||||| ||||||| |||||||| Sbjct 219598 GGGCCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCA 219657 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || ||||| | ||| | | ||||| | ||| || |||||| | Sbjct 219658 TGCCTAGTAGGGCGCAGGGCAAAGCCTCCGTCAGGAACTCCTGCTCAATGGTGACGGCAT 219717 Query 794131 CGATGATGATCTGCCTGGGCACGTC--GGAC--GACGGCTTGTCGACGAGCATCGTGTAG 794186 || ||||||||| | | |||||| | | ||||| |||| || | | | | | Sbjct 219718 CGGTGATGATCTTCTCGACCACGTCCTTGCCGGGACGG-TTGTTGAGGTG---GGAGAAC 219773 Query 794187 AGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 ||||||||||| |||||| |||||||| Sbjct 219774 AGCAGGCAGGCGAAGTCGGTGTGCAGACC 219802 >seq20 Length=805568 Score = 120 bits (132), Expect = 5e-21 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||| |||||||||||| | ||| | ||| | || |||||||| || |||||| | | Sbjct 347745 CCAACTATCTCGACATCAAGGCTCTCTTGGATGTTGGTTGCAAGACTGTTGCCAACATGA 347804 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| |||||||| ||||||||||| || ||||||| | ||| Sbjct 347805 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACGTTCAACATCACGAACG 347855 >seq5 Length=1588943 Score = 113 bits (124), Expect = 7e-19 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 || |||||||||||||||||| | | |||||||| || |||||| || | || |||| Sbjct 826280 CTTCCGCCCGGCCGCCACAAGATTGTGATCCTCGACGAAGCCGACAGCATGACCTCGGGA 826221 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 |||||||| || || || || ||||| | ||| |||| |||||||| || || | Sbjct 826220 GCCCAGCAAGCGCTACGGCGTACGATGGAGATCTACTCCAATACGACGCGCTTCGCCTTC 826161 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 || || ||| |||| | | | |||||| |||| || ||| |||||||| | || Sbjct 826160 GCATGTAACCAGTCGAACAAGATTATCGAACCCCTGCAATCCCGATGCGCCATTCTACGT 826101 Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAA 2019434 | | || | || || |||||| ||| | ||||||| |||| ||||| || || Sbjct 826100 TACGGCCGATTAACGGATGCCCAGGTCGTCAAGCGTCTGATGCAGATCATCGAAGCGGAG 826041 Query 2019435 AAGGT 2019439 || || Sbjct 826040 AAAGT 826036 >seq51 Length=278824 Score = 91.5 bits (100), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || || || | || |||| || ||||| || |||||||| |||| |||||| || Sbjct 149701 CTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGA 149760 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||| ||||| || | ||| | ||| | || || | ||| | | || Sbjct 149761 GGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGAATGTTGAGACC 149820 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || |||||| ||||||||| | || || | || || || || ||||| ||||| Sbjct 149821 AATACCACCGGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTC 149880 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| | |||||||| | || ||||| |||||| || | | | || || Sbjct 149881 AATGCTGTCGTCTTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTTCC 149940 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||||||||||| || || Sbjct 149941 AGCATTGAAGAGAGTTGG 149958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916215764126432