Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq14 116 3e-21 seq52 86.0 5e-12 >seq14 Length=1021207 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 |||||||| | | ||| || ||||| || |||||||| || || || ||||| ||||| Sbjct 858804 TGTCCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCG 858863 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | ||||||| ||| || || || || ||||| | || | | |||||||||||| Sbjct 858864 CTTAAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGA 858923 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 ||||| || || ||||| || ||| || | || || | || | ||||| ||| ||| Sbjct 858924 GGAATGCCTTCCTTGTCCTG-AATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTC 858982 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || ||||| || || || || || || || || |||||||| Sbjct 858983 AACTTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACGAAAATCTGCAT 859033 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || || ||| || || |||||||| || || | | Sbjct 859554 CCACCACGCAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 859613 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || || ||||| | ||||||| || || || || ||| Sbjct 859614 AGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGA 859673 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || ||||| | || | || || || ||| || Sbjct 859674 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGACC 859733 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || |||||||| | || || || || |||||||| || Sbjct 859734 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTT 859783 >seq52 Length=261245 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| ||| || || || ||||| || || | | || || Sbjct 16356 CGGAGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCG 16415 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||| ||||| || | |||| || ||||| || || ||||||||||| ||| Sbjct 16416 TCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTG 16475 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | ||||| | || || ||||| || ||| Sbjct 16476 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATA 16535 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 16536 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 16570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217847880608