Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq40 140 2e-27 seq14 95.1 9e-14 >seq40 Length=406905 Score = 140 bits (154), Expect = 2e-27 Identities = 664/1042 (64%), Gaps = 15/1042 (1%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | ||| || ||||| ||||| ||||| || || | | || || Sbjct 182913 ATACCGTTGGCATCAAGATCGAAGGTGACCTCAATCTGAGGAACACCGCGGGGTGCGGGC 182854 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | || || || || || || ||| || || ||| Sbjct 182853 GGGATGCCAGTAAGCTCGAACTTACCGAGCAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 182794 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | ||| || || ||| || || || || |||| | || || Sbjct 182793 CCCTCGTATACTTGAATGAGCACACCAGGCTGGTTGTCGGAGAAAGTGGAGAAGACCTCC 182734 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || ||||| || ||||| | || | || ||||| ||||||||||| Sbjct 182733 GACTTCTTGGTGGGAATAGTGGTGTTGCGGGGGATGAGCTTAGTCATCATACCACCAGCG 182674 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| || || | |||||| | || | || | || | | || Sbjct 182673 GTCTCGATACCGAGAGACAGCGGGGCGACATCGAGAAGCAGGATCTCGTTGGTCGACTTG 182614 Query 281739 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | | | | |||| || ||||| || || | || ||||| || || ||||| ||| Sbjct 182613 GAGCTGGTGTCACCAGAGAGGATAGCAGCCTGGACTGCGGCACCGTAGGCGACAGCCTCA 182554 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 281857 || || || | | || || | | ||||| ||||| | | | || || | ||| Sbjct 182553 TCGGGGTTGATGGATTTGTTGGGCTCCTTACCGTTGAAGTAGTCGGTAATGAGCT-TCTG 182495 Query 281858 ACCTTAGGA-ATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 | || ||||| | || || || || | || || || || ||||| || || || Sbjct 182494 AATGCGGGGGATACGGGTGGAGCCACCGACAAGGACGATCTCGTGGACCTGGGACTTGTC 182435 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 | || | ||| || || || || || | | | | || || | || Sbjct 182434 GATCTTGGCATCTGCCAAGACACGATCGACAGGCTGGATAGTGGATCGGAAGAGATCCTG 182375 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 || || ||||||||| ||| | || || || | || || ||||| |||||| || Sbjct 182374 GCACAGCTCTTCGAATCGAGCACGGGT--GATGGAGGTGTAGAAGTCAATACCTTCGTAC 182317 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | || |||| || |||| ||| || | || ||||| || | ||| || ||||| ||| Sbjct 182316 AGGGAGTCAATCTCGATCGAAGTCTGTGCAGACGAAGAGAGGGTACGCTTGGCACGCTCA 182257 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTCAAATCTGTTTTATATTT 282153 || || || | || | ||| | || || | | || | | ||| | || | || Sbjct 182256 CAGGCGGTTCGGAGACGTCGGAGAGCACGAGCATTAGTGGAT-AGATCCTTCTTGTGCTT 182198 Query 282154 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 282213 | |||||| || | || | | || || || || ||||| || ||||| ||||| Sbjct 182197 GCGCTTGAATTCGTTGACGAAGTGGTTGACGAGTCGGTTGTCAAAGTCCTCACCACCCAA 182138 Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 282273 | ||| | || | |||| | || | ||| | || || |||| | || ||| | Sbjct 182137 GTGAGTGTCACCAGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGTCAGAAGGGA 182078 Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG-- 282331 |||||| ||| |||||||| | ||| || || || || || | || || || Sbjct 182077 GACATCAAAGGTACCACCACCAAGATCGAAGATCAGAACGTT--TCGCTCACCCTCGGCC 182020 Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||||||||| || || | ||||| || || || || ||||| |||| | || Sbjct 182019 TTCTTATCAAGACCGTAGGCGATGGCAGCGGCCGTAGGCTCGTTAATGATTCGGAGGACG 181960 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| ||||| || || |||||||||| ||| || ||||| || || Sbjct 181959 TTCAGGCCAGCAATGAGACCTGCGTCCTTGGTGGCTTGTCGTTGGGAGTCGTTGAAGTAG 181900 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || |||||||||| Sbjct 181899 GCCGGGACGGTGATAACGGCAT 181878 >seq14 Length=1021207 Score = 95.1 bits (104), Expect = 9e-14 Identities = 113/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 ||||| ||||| || || | ||| || ||||| ||||| || | ||| | || || || Sbjct 733141 TTATCCAGACCGTAGGCGATAGCCGCGGCAGTAGGTTCGTTGACAATGCGCAGCACGTTG 733082 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || || || | || ||||| |||||||||||||| || ||||| ||||| ||| Sbjct 733081 AGGCCGGCGATGGTGCCAGCATCCTTAGTGGCTTGTCTCTGGTTGTCGTTGAAATAGGCA 733022 Query 282455 GGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485 || ||||||| |||||| | || | |||||| Sbjct 733021 GGGACAGTAACAACGGCGTGAGTAACCTTCTT 732990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740616260417088