Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq51 143 3e-29 seq52 111 2e-19 seq14 109 5e-19 >seq51 Length=278824 Score = 143 bits (158), Expect = 3e-29 Identities = 753/1176 (64%), Gaps = 56/1176 (5%) Strand=Plus/Plus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109 || ||| ||||||||||||||| ||||||||||||||||| | ||| ||| | Sbjct 148442 GATTGGGACTGGTCAATGAACGCACCACGGTCAGCGGCCATCTGGACAACAGTTCGTTGG 148501 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 || |||||| | |||||||| || |||||||| | | |||||| |||| Sbjct 148502 GAG---ATTTCCCAGACGGTCTTGTAAAGAGCCTTGATATCAGCAGGAATGTTCGGGATG 148558 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 ||| | || |||| | |||| || | || ||| || | | || Sbjct 148559 TTCTGAATTGAACCGCCCTCGGCAATGATACGGTTCTTCATGCTATCAGACCAGAGACCC 148618 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | || | ||||| | || || | | || || ||||| |||||||| ||||| || Sbjct 148619 ATGTCAACAAGGTCCTTGAGCAACCAGGGGTTAACGACCTGGAACTCGCCAGCGAGGACA 148678 Query 148290 CGCCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 || || ||| || | |||| || | || || || |||| ||||| |||| ||||| Sbjct 148679 CGGCG-AGAGTAGATGTTGGAAGTGTAAGGCTCGAAGCACTCATTGTTACCCAGGATCTG 148737 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 | || | || |||||||| || |||| || |||||||| ||| ||||| Sbjct 148738 GGATGTGCTGGCTGTGGGCATAGGGGCGACCAACAAGCTGTTGCGCACACC---ATTTTG 148794 Query 148409 TAT--TTTGCGC-TTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACAT 148465 | | ||||| | || || | ||||||||| || ||| || || || |||||||| Sbjct 148795 TTTGATTTGCTCCTTGAGGCTGGTCCAGTCCCAAAGATCCGATGGGGTGACATTCCACAT 148854 Query 148466 GTCGTACTGCAGAATGCCGCGGCTAG-CGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT 148524 |||||| || || ||||| | || || |||| || ||||| | ||| || || | Sbjct 148855 GTCGTATTGAAGGATGCC-CTGCGAGACGGGAGAACCTTCGTAGGTAGAGTAAGGGCCTT 148913 Query 148525 GCGCCGCCGCCAGTTCGCAGCTCGC-CTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATT 148583 || || | || | ||| || || ||| | | ||| ||||||||| || Sbjct 148914 CAACCTTAGCAATCTCCATGGACGCAGTCAAG-GCGGCATGGTAGATCGTCTCGAAGATC 148972 Query 148584 TGCCTGTTGAGCAGCGCCGCCGACTCGC-TTTCGTACGGCATACGCAGCCGCACAAACGC 148642 ||| |||| | | ||| || || || | |||||||||| || || | Sbjct 148973 TGCTTGTTCAATTGTCTAGCC-TCTGGCGACTCAAAGGGCATACGCAATGCCAAGAATGT 149031 Query 148643 GTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC 148702 ||| ||||| ||||| || || | ||||||||| |||||| |||||| | ||| || Sbjct 149032 GTCAGCAAGACCCTGAACACCAAGGCCAATGGGACGGTGTCGCATGTTGCTGTTGCGGGC 149091 Query 148703 GCTCT-CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761 |||| || || || | ||| || ||||| ||| | |||| | || || || | Sbjct 149092 -CTCTGGGACGGGGTAATAATTGACATCAATGATTCTGTTCAAATTGTGAACGACGACTT 149150 Query 148762 TTGTAA--TTCTGC----GCAGCAATTCAAAA------TCGTACTTGTCATCTACGATGC 148809 |||| | ||| | | || ||| || |||| | |||| |||| | Sbjct 149151 GGGTAACCTCATGCAACTTCTGGAAGTCATAAGTGCCTTCGTTATAGTCA---ACGAAGG 149207 Query 148810 ATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACT 148869 | | || |||| || |||| ||||| || ||| |||||| |||||| ||||| Sbjct 149208 A---GGGCAACGCGAGGGAAGCTAAGTTGCAGACAGCCACCTCATCAGGGGCGGAGTACT 149264 Query 148870 CTACGATCTCGGCGCACAGATT---GCTGCATTTGATCACGCCCACG-TTCTTTTGATTG 148925 | | |||||||| ||| ||||| ||||| || | ||| | ||||| ||||| Sbjct 149265 CGATGATCTCGGTGCAAAGATTCGAGCTGC----GAATAGTACCAAGATTCTTCTGATTA 149320 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTT 148985 ||||||| |||||| |||||||| |||||| | || ||||| || ||| | Sbjct 149321 CTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAAGGGATTTCCAGTCTCAGTCTGAGCC 149380 Query 148986 TCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCC 149042 || | || | ||| ||| | ||| || | | ||| | |||||||| | Sbjct 149381 TCGAGAATGGCGTACC---ACAGCTTCTGAGCCTTAATCTTCTGGCGGCCGCGACCCT-C 149436 Query 149043 TGC-TCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGG 149101 ||| ||||| ||||| ||||||| | ||||| || || | ||||| || Sbjct 149437 TGCTTCGTACTTCTCGTACAGGGCCTCGAACTCATCGCCATAAACGTCAGCTAGACCAGG 149496 Query 149102 GCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAG 149161 ||| | || || |||||||| | |||| | || | | | || |||||||| || || Sbjct 149497 GCATTCGTTAGGACACATGAGGGTCCACTCTCCATTCTTCTCAACACGCTTCATGAAGAG 149556 Query 149162 ATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGC 149197 ||| || | |||||| || | ||| ||||| || Sbjct 149557 ATCTGGGATCCAGAGAGCCAGGAAGAGATCGCGGGC 149592 >seq52 Length=261245 Score = 111 bits (122), Expect = 2e-19 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | |||| ||| ||||| || ||||| ||| | || ||| ||| ||||| Sbjct 16367 ATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGT--ACGGCCGTCTTCGAGT 16424 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || || |||||||||||||| || || || |||||||| |||| Sbjct 16425 TGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATC 16484 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | |||||| | | |||||| || | ||||| || ||||| Sbjct 16485 TTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCC 16544 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| ||||||||| Sbjct 16545 GTGAGGGTCTTGACGAAGATCTGCATG 16571 >seq14 Length=1021207 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| ||| ||||| || ||||| ||| | ||| ||| ||||||||||||||| | Sbjct 859583 GGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACC-GTCCTCGAGCTGCTTTC 859641 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||| ||||||||||| || || |||||||| |||||| || Sbjct 859642 CAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACT 859701 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | || || || || | |||| ||| ||||| || |||| Sbjct 859702 TGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAG 859761 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 859762 TCTTGACGAAGATCTGCAT 859780 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || |||||||||| | ||| ||| | || || |||||||| || Sbjct 858837 GTGGACTCCTTCTGGATGTTGTAATCGCTTAAGGTGCGACCA-TCTTCCAGCTGCTTACC 858895 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || ||||| || ||||| |||||||||||||| ||||| ||| Sbjct 858896 AGCGAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGCTCTT 858955 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| | || || || | ||| | || || || |||| || Sbjct 858956 CACGTTGTCGATGGTGTCGGAAGATTCAACTTCTAGGGTAATAGTCTTTCCCGTCAATGT 859015 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 859016 CTTGACGAAAATCTGCAT 859033 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| |||| || || | | | ||||| | |||||| || Sbjct 859065 GTTGACTCCTTCTGAATATTGTAGTCGCTCAGTGTTCGGCCA-TCCTCCAACTGCTTACC 859123 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || || |||||||| ||||| ||||||||||| |||||| || Sbjct 859124 CGCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATCTTGGATTT 859183 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||| | | |||||| || | |||| || |||||||| || || Sbjct 859184 GACGTTGTCGATCGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGT 859243 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 859244 CTTCACGAAGATTTGCAT 859261 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| ||| || || | | | ||||| ||||||||||| Sbjct 859293 GTCGATTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCA-TCCTCAAGCTGCTTGCC 859351 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||| ||||| ||||| |||||||| |||||| ||| Sbjct 859352 GGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTCGACTT 859411 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| | ||| || || | |||| ||| || ||||| || || Sbjct 859412 AACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTTCCGGTAAGGGT 859471 Query 133643 TTTTACGA 133650 || |||| Sbjct 859472 CTTGACGA 859479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419059685120