Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq15 174 2e-37 seq51 105 1e-16 seq5 95.1 2e-13 >seq15 Length=993015 Score = 174 bits (192), Expect = 2e-37 Identities = 351/511 (69%), Gaps = 20/511 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||| ||| || ||||| ||||| ||||||||| | || | Sbjct 220337 GATCTGGCAGATGTAC-AAGAAGCACGAAGCTTCCTTCTGGACTGCCGAGGAGATTGATC 220279 Query 1455835 TCGGCGCCGACACGGTCCAC--TGGGTGT---CGC-TGAGCGACGACGAGCGCCATTTCA 1455888 | | || ||||| | || | ||| | | ||||||||| |||| Sbjct 220278 TATCCAAGGATC---TCCACGATTGGAGCAACCGCCTAAATGACGACGAGAAGTTCTTCA 220222 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||| | |||||||| || |||||| ||| ||||| || ||| ||||| | | Sbjct 220221 TCTCCCACATTCTCGCCTTCTT-CGCCGCATCCGACGGCATTGTCAACGAAAACCTTGTC 220163 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || ||| ||||| || | |||||||| || | || ||||| ||||||||| Sbjct 220162 GAGCGATTTTCTGGTGAGGTTCAGATCCCAGAGGCCCGATGCTTCTACGGCTTCCAGATC 220103 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || || ||||| ||||| || ||||||||| ||||||| Sbjct 220102 ATGATGGAGAACATCCACTCCGAGACGTACTCTCTCCTCATTGACACCTACATCAAGGAG 220043 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 || | | ||||| || ||||| || || || || | || | | | || ||| Sbjct 220042 CCTGCCCAGAAGACACATCTCTTCAATGCTATTGAGACCATTCCTTGCATCCGCAAGAAG 219983 Query 1456129 GCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 ||||||||||| || | ||||| | ||||| || || || ||| ||| |||| | Sbjct 219982 GCCGACTGGGCTCTGCACTGGATTGCCGACAAGAAG----TCCAC-CTTCGCCCAGCGTC 219928 Query 1456186 TCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 | | | ||| |||| ||| ||||| ||||| ||| || ||| ||||||| | Sbjct 219927 TTATTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGAGCCTTCGCTTCCATCTTCT 219868 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||| || || ||||||||||| Sbjct 219867 GGCTCAAGAAGCGTGGTCTTATGCCCGGTCT 219837 Score = 134 bits (148), Expect = 2e-25 Identities = 237/338 (70%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG--- 1456504 ||| ||||| ||||| ||||| ||||| | | | | | ||||||| ||||| Sbjct 219802 GGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCC---CACCTCAACAA-CCGTCCCGG 219747 Query 1456505 -ACCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAG 1456563 | |||||| | || |||||||| ||| |||||| || ||| | ||||| | | Sbjct 219746 CAAGGACGTGGTCGAGAAGATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGAC 219687 Query 1456564 CGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTG 1456623 ||| | |||| || || | ||||||||||||| | |||||| |||||||| | Sbjct 219686 GGAGGCTTTGCCCTGCGCCCTACTAGGCATGAACGCCAAC-CTCATGAAGCAGTACATCG 219628 Query 1456624 AATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC 1456683 | || ||||||||||||||||| | ||| |||||| | ||||| ||||| | | Sbjct 219627 AGTTC-GTCGCCGACCGCCTGCTGGTGGCCCTCGGCAATG-AGAAGGTGTACCGCTCCAC 219570 Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 |||||| ||| | |||||| ||||| || | |||||||||||||| |||||| Sbjct 219569 CAACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAA 219510 Query 1456744 CCGCG-TGGCGAGTACGCCAAGGCCGGCGTCACCGCCA 1456780 |||| ||| || ||| |||||||| |||| |||| Sbjct 219509 GCGCGTTGGTGATTACCAGAAGGCCGGTGTCATGGCCA 219472 >seq51 Length=278824 Score = 105 bits (116), Expect = 1e-16 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || ||||| ||||| || || || | | ||| ||||| ||||| || | ||| Sbjct 149958 CCAACTCTCTTCAATGCTGGAACACCCCAGGCCCAGCTCTCGTCTTGCTTCCTCGTCGAC 149899 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||| | ||| || ||||| ||||||||||| |||||| || || | |||||| Sbjct 149898 ATGAAAGACGACAGCATTGAGGGTATCTATGACACCCTCAAGACCTGTGCCATGATCTCC 149839 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| |||||| || || ||| | | ||| | || || | ||| | ||| | Sbjct 149838 AAGATGGCCGGTGGTATTGGTCTCAACATTCACCGCATCCGTGCTACTGGCTCATACATT 149779 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || ||||| |||||| || |||||| |||| |||||||| || || || || |||| Sbjct 149778 GCTGGCACTAACGGCACCTCGAACGGCATTGTACCCATGCTACGTGTCTTCAATAACACT 149719 Query 260165 GCGCGCTACGTCGACCAG 260182 || | ||||| || ||| Sbjct 149718 GCAAGATACGTAGATCAG 149701 >seq5 Length=1588943 Score = 95.1 bits (104), Expect = 2e-13 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935 || || ||||| || ||| ||||||| ||||| | | | |||| ||| || || Sbjct 826102 CGTAGAATGGCGCATCGGGATTGCAGGGGTTCGATAATCTTGTTCGACTGGTTACATGCG 826161 Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995 | ||| || ||||||||||||| | | ||||| || ||| || || || ||||| Sbjct 826162 AAGGCGAAGCGCGTCGTATTGGAGTAGATCTCCATCGTACGCCGTAGCGCTTGCTGGGCT 826221 Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAGA 333055 ||| || | || |||||| ||||||||||| | ||||||||||| ||| |||| ||| Sbjct 826222 CCCGAGGTCATGCTGTCGGCTTCGTCGAGGATCACAATCTTGTGGCGGCCGGGCGGAAGA 826281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177783421870656