Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq14 114 1e-20 seq52 113 4e-20 >seq14 Length=1021207 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| |||||| || |||||||||||| ||||| || | || ||| Sbjct 858825 ACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGCTTAAGGTGCGACCATCTTCC 858884 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| || || || | || ||||| |||| ||||| || ||||||||| Sbjct 858885 AGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 858944 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||||| |||| | | |||||| ||||| || || | || || || || Sbjct 858945 ATCTTGCTCTTCA-CGTTGTCGATGGTGTCGGAAGATTCAACTTCTAGGGTAATAGTCTT 859003 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| || || || || |||||||| Sbjct 859004 TCCCGTCAATGTCTTGACGAAAATCTGCAT 859033 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| ||||||||||| |||| | || || |||| || |||||||| || Sbjct 859584 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCA 859643 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || ||||| ||||| ||||| | ||||| | |||||||||| |||||| ||| Sbjct 859644 GCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 859703 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | |||| | | || || ||||| ||||| | ||||| || || || || | ||| Sbjct 859704 A-CGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGT 859762 Query 35719 TTTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 859763 CTTGACGAAGATCTGCAT 859780 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || |||||| | || || |||||||| || || || Sbjct 859299 TCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAA 859358 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | ||||| || ||||||||| |||||| ||| | | | Sbjct 859359 ATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTG 859418 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | |||||| ||| || ||||| | ||||| || || || || Sbjct 859419 TCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTTCCGGT 859465 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| ||||| ||| || ||||| | || |||| ||||||||||||||| Sbjct 859070 CTCCTTCTGAATATTGTAGTCGCTCAGTGTTCGGCCATCCTCCAACTGCTTACCCGCAAA 859129 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || || ||||| | || | | ||||||||| |||| || | || || Sbjct 859130 GATAAGTCGTTGTTGGTCGGGCGGGATTCCTTCCTTGTCCTGGATC-TTGGATTTGACGT 859188 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || |||||||| | |||||||| || || || | || |||| Sbjct 859189 TGTCGATCGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTCA 859248 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 859249 CGAAGATTTGCAT 859261 >seq52 Length=261245 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| |||| | || || |||| || || ||||| || Sbjct 16374 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGCTTGCCG 16433 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || |||| ||||||||||| | |||| | |||||||||| |||||| ||| Sbjct 16434 GCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 16493 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | |||||||| || |||||||| | ||||| || || ||||| | || Sbjct 16494 ACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 16553 Query 35720 TTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 16554 TTGACGAAGATCTGCAT 16570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791977143040