Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq51 244 1e-59 seq15 123 3e-23 >seq51 Length=278824 Score = 244 bits (270), Expect = 1e-59 Identities = 588/881 (67%), Gaps = 18/881 (2%) Strand=Plus/Plus Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 ||||| || ||||| | |||||||||||| ||| ||| ||||||||||| || || Sbjct 149297 ATAGTACCAAGATTCTTCTGATTACTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAAG 149356 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT- 69470 ||| | ||||| ||| |||||| |||| ||| | | ||| | | ||| || || Sbjct 149357 GGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCACAGCTTCTGAGCCTTAATC 149416 Query 69471 TACGGTCTTGTAACGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCT 69528 | | | | | || |||| ||| || || | ||| | ||| ||||| ||||| Sbjct 149417 TTCTGGCG-GCCGCGACCCTCTGCTTCGTACTTCTCGTACAGGGCC--TCGAACTCATCG 149473 Query 69529 CCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCA 69588 || |||| ||| | | ||||| ||||| || |||||||| | | |||| | ||| Sbjct 149474 CCATAAACGTCAGCTAGACCAGGGCATTCGTTAGGACACATGAGGGTCCACTCTCCATTC 149533 Query 69589 TCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTT 69648 | || ||| || ||||| || ||||| || ||||| ||||| | |||||||| | || Sbjct 149534 TTCTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAGCCAGGAAGAGATCGCGGGCA 149593 Query 69649 CTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGC 69708 | | ||| || || || || ||| |||||| || ||||| | || ||| || ||| Sbjct 149594 CGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCAAAAACATCCGAGTGC 149653 Query 69709 CATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTAT 69768 || || || ||||| || || | | || |||| || || || |||||||||| |||| Sbjct 149654 CAAGGCTCGAGATAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTACGTAT 149713 Query 69769 CTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTT 69828 || ||||||||||| |||| | ||||| || | ||| || || || | || || || Sbjct 149714 CTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTTAGTG 149773 Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 |||| ||| || || | || || || ||| ||||| || || || ||| Sbjct 149774 CCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGAATGTTGAGACCAATACCACCGGCC 149833 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 || || ||||| | ||||| || | |||||||| |||||||| ||||| || ||| Sbjct 149834 ATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCGTCT 149893 Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAAT 70008 |||||| | || || || || | || || ||||| ||||| || | Sbjct 149894 TTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTTCCAGCATTGAAGAGA 149953 Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 || || || || |||||||| |||| ||| | || ||||| || | ||| || Sbjct 149954 GTTGGGGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGACTTTC 150013 Query 70069 TCTATATC----CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCG 70124 || | ||| || | |||| || | || |||||||| | ||| ||||| |||| Sbjct 150014 TCAACATCATCACCCCAGATG----CCGACAGCCACACGCATGATCATGTGCTGTGGTCT 150069 Query 70125 TTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAA 70184 ||||| | || | | | |||| ||||| ||| |||||||| || || || || Sbjct 150070 CTCTACAATCTTGTCGTCGAGCTTCAGTAGGTAAGATCGCTCCAGAGTCTTGAAGCCGAA 150129 Query 70185 ATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATAACAGA 70223 || | ||| ||||| ||||| || || | ||| |||| Sbjct 150130 GTATTGGTAGTTGAAA--TCTCTGTCATAGACAATGGCAGA 150168 >seq15 Length=993015 Score = 123 bits (136), Expect = 3e-23 Identities = 374/573 (65%), Gaps = 20/573 (3%) Strand=Plus/Plus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| | |||||||||||| || || ||||| || | ||| | |||||| || Sbjct 219771 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAAATGAGTTCGTTGGAG 219830 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || || || ||||| ||||||||||| |||||||| || |||| ||| || | ||| Sbjct 219831 AAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCG 219890 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 |||||||| || || || || || || |||| ||| | || || || || | | Sbjct 219891 CTGAAGAAGATACCCTCAACGGCGGCGAAGGCAATAAGACGCTGGGCG-AAGGTGGA-CT 219948 Query 39788 TTATGT-----ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | ||| ||||| | | | ||||| || || ||||| | ||||| || || | Sbjct 219949 TCTTGTCGGCAATCCAGTGCAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 220008 Query 39843 CTATAGCATTAAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAAC 39901 | |||||||| ||||||| ||| || | || || || | || || || || | Sbjct 220009 CAATAGCATTGAAGAGAT-GTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGG 220067 Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTT 39961 ||| ||| | || || |||||||| || ||| ||||| || ||||| || |||| Sbjct 220068 AGAGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGG 220127 Query 39962 GCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCA 40021 || || | || || ||||| | |||||| || | | ||||| || || || || Sbjct 220128 GCCTCTGGGATCTGAACCTCACCAGAAAATCGCTCGACAAGGTTTTCGTTGACAATGCCG 220187 Query 40022 TCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT 40081 || ||||| || || || | | || || || | || || || |||| | Sbjct 220188 TCGGATGCGGCGAAGAAGGCGAGAATGTGGGAGATGAAGAACTTCTCGTC----GTCATT 220243 Query 40082 -------TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 40134 || |||| || | || ||| || |||| ||| | || || || ||||| || Sbjct 220244 TAGGCGGTTGCTCCAATCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAA 220303 Query 40135 CGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 || || || ||| |||||||| | ||| || Sbjct 220304 GGAAGCTTCGTGCTTCTTGTACATCTGCCAGAT 220336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906327128320