Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq51 219 5e-52 seq15 100 4e-16 seq5 98.7 1e-15 >seq51 Length=278824 Score = 219 bits (242), Expect = 5e-52 Identities = 1013/1581 (64%), Gaps = 41/1581 (3%) Strand=Plus/Plus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 |||||||| || || || ||| |||||||||| | || || | | ||| ||||| Sbjct 148505 ATTTCCCAGACGGTCTTGTAAAGAGCCTTGATATCAGCAGGAATGTTCGGGATGTTCTGA 148564 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| ||| | | || | | |||||| | ||||||||||| || | Sbjct 148565 ATTGAACCGCCCTCGGCAATGATACGGTTCTTCATGCTATCAGACCAGAGACCCATGTCA 148624 Query 110645 TTGAGGTCATTGA----CGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCT 110700 ||||| |||| | ||| | || || | ||||| || |||||| | Sbjct 148625 ACAAGGTCCTTGAGCAACCAGGGG----TTAACGACCTGGAACTCGCCAGCGAGGACACG 148680 Query 110701 TCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGC 110760 | ||||||||| | ||||| || || ||||| ||||| ||||||| ||| || | Sbjct 148681 GCGAGAGTAGATGTTGGAAGTGTAAGGCTCGAAGCACTCATTGTTACCCAGGATCTGGGA 148740 Query 110761 GGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGAT 110820 ||| |||||| ||||| || || | ||| | ||||| || | ||| || | ||||| Sbjct 148741 TGTGCTGGCTGTGGGCATAGGGGCGACCAACAAGCTGTTGCGCACACCATTTTGTTTGAT 148800 Query 110821 GCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTCA 110878 | |||||||| |||||| | || | ||| | || |||| ||||||| Sbjct 148801 TTGCTCCTTGAGGCTGGTCCAGTCCCAAA-GATCCGATGGGGTGACATTCC-ACATGTCG 148858 Query 110879 AACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCT 110938 | ||||| | || || || |||||||||| || |||| || | |||| | Sbjct 148859 TATTGAAGGATGCCCTGCGAGACGGGAGAACCTTCGTAGGTAGAGTAAGGGCCTTCAACC 148918 Query 110939 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 | ||| | || | ||| || || || || || || || || ||||| | Sbjct 148919 TTAGCAATCTCCATGGACGCAGTCAAGGCGGCATGGTAGATCGTCTCGAAGATCTGCTTG 148978 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACATCCGC 111057 |||| | | || || || ||||| | | || || | | ||| || || Sbjct 148979 TTCAATTGTCTAGCCTCTGGCGACTCAAAGGGCATA-CGCAATGCCAAGAATGTGTCAGC 149037 Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 111117 ||||| |||||||| | ||||| || | ||||||||| || || || || ||| Sbjct 149038 AAGACCCTGAACACCAAGGCCAATGGGACGGTGTCGCATGTTGCTGTTGCGGGCC-TCTG 149096 Query 111118 A-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 ||||| ||| |||| ||||||| || ||| | ||| | || | | || | Sbjct 149097 GGACGGGGTAATAATTGACATCAATGATTCTGTTCAAATTGTGAACGACGACTTGGGTAA 149156 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG- 111235 ||||| | || | | ||| |||||| || | || | || || ||| || Sbjct 149157 CCTCATGCAACTTCTGGAAGTCATAAGTGCCT---TCGTTATAGTCA-ACGAAGGAGGGC 149212 Query 111236 ---GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 |||| || || || ||||| |||||| |||||| | | |||||| | || Sbjct 149213 AACGCGAGGGAAGCTAAGTTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCGATGATC 149272 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || || || | || || || ||| || || | |||||| || |||||||| |||| Sbjct 149273 TCGGTGCAAAGATTCGAGCTGCGAATAGTACCAAGATTCTTCTGATTACTCTTGCGGTTG 149332 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || ||||||||| |||||| |||| | || ||||| ||||| | | |||||| || Sbjct 149333 CAGTGATCCTTGTAAAGCATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCG 149392 Query 111413 TTCCAAA-CATCGGCGGCTGGTACAA-TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 111470 | ||| | | || | | || | ||||| | | || ||||| || |||||||| Sbjct 149393 TACCACAGCTTCTGAGCCTTAATCTTCTGGCG--GCCGCGACCCTCTGCTTCGTACTTCT 149450 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGA 111529 ||| ||||| || ||||| || || |||| | ||||| || || || || ||| Sbjct 149451 CGTACAGGGCCTCGAACTCATCGCCATAAACGTCAGCTAGACCAGG-GCATTCGTTAGGA 149509 Query 111530 CAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 || | || | ||| | ||| | |||||| ||||||||||| || ||||| ||||| Sbjct 149510 CACATGAGGGTCCACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCTGGGATCCAG 149569 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 || | |||||||| | ||| | || || | || ||||| ||| | ||| Sbjct 149570 AGAGCCAGGAAGAGATCGCGGGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCA 149629 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTT 111705 |||||||| | | ||||| |||||| ||||| ||||||| |||| || || || Sbjct 149630 AGGAACTCAAAAACATCCGAGTGCCAAGGCTCGAGATAGATGGCGAAAGCACCAGGTCTC 149689 Query 111706 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | | | ||| | |||| ||| || | || ||| || || || || ||||| || | Sbjct 149690 TTGTTG-CCACCCTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTAC 149748 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 ||| || | || || || || || ||| || | | || | | || Sbjct 149749 AATGCCGTTCGAGGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTG 149808 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 |||| | |||||||| || ||| ||| ||||| ||||| | | || || | Sbjct 149809 AATGTTGAGACCAATACCACCGGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTC 149868 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||||||||| | || ||| || || || ||| ||||||||| || | ||| || Sbjct 149869 ATAGATACCCTCAATGCTGTCGTCTTTCATGTCGACGAGGAAGCAAGACGAGAGCTG-GG 149927 Query 111946 TCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGA 112002 || ||||| |||||||||||||| ||||| | || ||| |||| || ||| || Sbjct 149928 CCTGGGGTGTTCCAGCATTGAAGAGAGTTGGGGAAGCATGAGTGAA-GTA-TTTGCTAGA 149985 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 ||| || ||| |||| | ||| |||| || || || |||||||| || || Sbjct 149986 CATGAGGTTGTAGGTCTGAATGACTTTCTCAACATCATCACCCCAGATGCCGACAGCCAC 150045 Query 112063 CCGCATGAACATGTACTGTGG 112083 ||||||| ||||| |||||| Sbjct 150046 ACGCATGATCATGTGCTGTGG 150066 >seq15 Length=993015 Score = 100 bits (110), Expect = 4e-16 Identities = 336/514 (65%), Gaps = 17/514 (3%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| || || ||||| ||||| || |||||| ||||| ||||| ||||| Sbjct 219794 GTGCAGACCCTCGTCACGCGAAATGAGTTCGTTGGAGAAGGTCAGACCGGGCATAAGACC 219853 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | ||| | ||| ||||||||||||||| || Sbjct 219854 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCGCTGAAGAAGATACCCTCAACGGC 219913 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTG-CATCAAACCATTTCAT 122846 || || |||| ||| || | |||||||| | |||| ||| | ||| ||| | || Sbjct 219914 GGCGAAGGCAATAAGACGCTGGGCGAAGGTG---GACTTCTTGTCGGCAATCCAGTGCAG 219970 Query 122847 TGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTT 122906 ||||| | |||||||| || || || | || | || || | || | || | Sbjct 219971 AGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATAGCATTGAAGAGATGTGT 220030 Query 122907 CTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAAC 122966 ||| | | ||||| ||||| ||||||| | || || || ||| || | Sbjct 220031 CTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGAGAGTACGTCTCGGAGTGGAT 220090 Query 122967 CAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCAT 123025 | | ||| ||| | || | ||||||| | || || || |||||||||||| Sbjct 220091 GTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGGGCCTCTGGGATCTGAACCTCA- 220148 Query 123026 CCGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATG 123082 || ||||| | | || | || || ||||| || ||||| | || ||||| | Sbjct 220149 CCAGAAAATCG--CTCGACAAGGTTTTCGTTGACAATGCCGTCGGATGCGGCGAAGAAGG 220206 Query 123083 CCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTCGTCAA 123139 | || |||| ||||| ||| || | ||||| | || | |||| |||| | Sbjct 220207 CGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCATTTAGGCGGTTGCTCCAATCGTGGA 220266 Query 123140 GATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 |||| ||||| | ||||| || || |||||||| Sbjct 220267 GATCCTTGGATAGATCAATCTCCTCGGCAGTCCA 220300 >seq5 Length=1588943 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||||||||||||||||| ||||| || ||||| || || | | |||||| Sbjct 1512708 GCATCAATCTCATCAATGAAGATGATACACGGCGTATTTTTTCGCGCTGTGGCGAAGAGA 1512767 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGC 11747 || | ||| | ||||| |||||||| |||||||| || || | || | || | | Sbjct 1512768 TCCCTAACTCGGGACGCACCAACACCAACGAACATCTCAACGAATTCTGAACCGCTTA-C 1512826 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || | |||||| || |||||| || ||| ||||| || || | ||||| |||| Sbjct 1512827 GCT-AAAGAATGGTACTCCTGATTCGCCAGCGGTGGCTTTCGCAAGTAATGTCTTACCCG 1512885 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 | || || || ||||||| || || || || ||||| |||||| Sbjct 1512886 TTCCAGGGGGTCCAGCGAGAATCGCACCGCGAGGTATCTTCGCACCA 1512932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029739084800