Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq51 181 1e-40 seq15 131 2e-25 >seq51 Length=278824 Score = 181 bits (200), Expect = 1e-40 Identities = 445/672 (66%), Gaps = 2/672 (0%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 || ||||| || || || | ||||| || ||||| ||||| || || | ||| | Sbjct 149979 AAATACTTCACTCATGCTTCCCCAACTCTCTTCAATGCTGGAACACCCCAGGCCCAGCTC 149920 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 ||| |||||||| || | ||||| || ||| || || || ||||| || || ||| Sbjct 149919 TCGTCTTGCTTCCTCGTCGACATGAAAGACGACAGCATTGAGGGTATCTATGACACCCTC 149860 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGT 53445 ||| |||||| ||||||||| | | |||||||| ||| || || | | | | | Sbjct 149859 AAGACCTGTGCCATGATCTCCAAGATGGCCGGTGGTATTGGTCTCAACATTCACCG-CAT 149801 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 |||||| | ||| || || || || |||||| | | | || || || || || Sbjct 149800 CCGTGCTACTGGCTCATACATTGCTGGCACTAACGGCACCTCGAACGGCATTGTACCCAT 149741 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 ||| || |||||||| ||||| || | ||||| | |||||||| ||| | || Sbjct 149740 GCTACGTGTCTTCAATAACACTGCAAGATACGTAGATCAGGGTGGCAACAAGAGACCTGG 149681 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | ||||||||||| |||||||| |||||| | || || | ||||| || || || || Sbjct 149680 TGCTTTCGCCATCTATCTCGAGCCTTGGCACTCGGATGTTTTTGAGTTCCTTGATCTTCG 149621 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCC 53685 ||| || || | || || | || ||| || || || ||||| ||||| || Sbjct 149620 AAAGAACCATGGCAAGGAGGAAGTTCGTGCCCGCGATCTCTTCCTGGCTCTCTGGATCCC 149561 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGA 53745 || ||||||||| | || |||||| | | |||||| ||| ||||| || ||||| Sbjct 149560 AGATCTCTTCATGAAGCGTGTTGAGAAGAATGGAGAGTGGACCCTCATGTGTCCTAACGA 149501 Query 53746 GTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGC 53805 ||||| || || | || || || || ||||| | | |||| || ||||| Sbjct 149500 ATGCCCTGGTCTAGCTGACGTTTATGGCGATGAGTTCGAGGCCCTGTACGAGAAGTACGA 149441 Query 53806 AGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAA 53865 || |||| ||| | ||||| | ||||| | || | ||| | || || ||| | Sbjct 149440 AGCAGAGGGTCGCGGCCGCCAGAAGATTAAGGCTCAGAAGCTGTGGTACGCCATTCTCGA 149381 Query 53866 GAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAG 53925 | ||| ||||| |||| || | |||| ||||||||| |||| ||||| Sbjct 149380 GGCTCAGACTGAGACTGGAAATCCCTTCATGCTTTACAAGGATCACTGCAACCGCAAGAG 149321 Query 53926 CAACCAGAAGAA 53937 || |||||||| Sbjct 149320 TAATCAGAAGAA 149309 >seq15 Length=993015 Score = 131 bits (144), Expect = 2e-25 Identities = 531/823 (65%), Gaps = 34/823 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 |||||||| || ||||| || || ||||||||||| || ||| |||||||||||||| Sbjct 219495 TAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATA 219554 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579 ||||||| ||||| | | | ||| | |||||| || | ||| ||| Sbjct 219555 AAGTCGAAGGGGTTGGTGGAGCGGTACAC---CTTCTCATTGCCGAGGGCCACCAGCAGG 219611 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || || | ||||||||| |||| || | |||||| | || | Sbjct 219612 CGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCTAGTAGGGCG 219671 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697 || |||| ||||| || | ||||| ||| | | | | ||| || | |||| Sbjct 219672 CAGGGCAAAGCCTCCGTCAGGAACTCCTGCTCAA--TGGTGACGGCATCGGTGATGATCT 219729 Query 74698 TGT-GA--ATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753 | | || | ||| ||| || | || | | ||||| ||| | ||| | || ||| Sbjct 219730 TCTCGACCACGTCCTTGCCGGGACGGTTGT---TGAGGTGGGAGAACAGCAGGCA-GGCG 219785 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || || ||| || || || | || | ||| || || || | || || ||| Sbjct 219786 AAGTCGGTGTGCAGACCCTCGTCACGCGAAATGAGTTCGTTGGAGAAGGTCAGACCGGGC 219845 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873 ||||| ||||||||||| | ||| ||||||| | ||||| || ||||||||||| || Sbjct 219846 ATAAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCGCTGAAGAAGATACCC 219905 Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA-------TCGGAAGTCAT 74926 || || || ||||| | ||| || || ||||| |||| | |||| | || Sbjct 219906 TCAACGGCGGCGAAGGCAATAAGACGCTGGGCGAA-GGTGGACTTCTTGTCGGCA---AT 219961 Query 74927 CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGA 74985 ||| | ||||||| || || ||| | | || ||| | || || || || | || Sbjct 219962 CCAGTGCAGAGCCCAGTCGGC-CTTCTTGCGGATGCAAGGAATGGTCTCAATAGCATTGA 220020 Query 74986 AGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCT 75045 |||| || ||||| | || ||||||| | ||||||| | || |||||||||| Sbjct 220021 AGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGAGAGTACGTCT 220080 Query 75046 CCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCT 75105 | || || || ||| | | |||| | ||||||| | || ||||||| |||| Sbjct 220081 CGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCTGGGATCT 220140 Query 75106 GTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 | || || ||||| | | | | || || |||| |||||||| || ||||||| Sbjct 220141 GAACCTCACCAGAAAATCGCTCGACAAGGTTTTCGTTGACAATGCCGTCGGATGCGGCGA 220200 Query 75166 AAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GAGTTTGTCCCAAT 75222 | || || || | ||| ||| ||| |||||| | | | ||| ||||| Sbjct 220201 AGAAGGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCATTTAGGCGGTTGCTCCAAT 220260 Query 75223 CCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | | || ||| | | ||||||||||||| | |||||||| Sbjct 220261 CGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAA 220303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214030022400