Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq14 179 9e-40 seq25 163 7e-35 seq52 145 2e-29 >seq14 Length=1021207 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| || |||||||| ||||| ||||| || || || || || || || || Sbjct 859040 ACGAAGTCTGAGAACAAGGTGCAGAGTTGACTCCTTCTGAATATTGTAGTCGCTCAGTGT 859099 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| |||||| || || |||||||| ||||||||||| || || | ||| Sbjct 859100 TCGGCCATCCTCCAACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCC 859159 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| ||| ||||| ||||| ||||| || || ||||| || Sbjct 859160 TTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATCGTGTCCGAAGACTCCACCTCAAG 859219 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||| || ||||| ||||| || || | ||||| Sbjct 859220 AGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 859261 Score = 172 bits (190), Expect = 1e-37 Identities = 173/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || |||||||| || |||||||| ||||| | Sbjct 858809 TCCACGGAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGCTTAA 858868 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||||||||||||||| || |||||||| || ||||| || || ||||||| Sbjct 858869 GGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGGAAT 858928 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||||| ||||| |||||||| ||||||||||| || |||||| || Sbjct 858929 GCCTTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCAACTTC 858988 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||||||||| | ||||| || || | |||||| Sbjct 858989 TAGGGTAATAGTCTTTCCCGTCAATGTCTTGACGAAAATCTGCAT 859033 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || ||| ||| || || ||||| || || | ||| || | || || Sbjct 859569 AGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCC 859628 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || | || |||||||| ||||||| || ||||||||| Sbjct 859629 TCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 859688 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || ||| ||| ||||| |||||||| ||| Sbjct 859689 TGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTC 859748 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||||||||| || || | |||||| || Sbjct 859749 TTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTT 859783 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| ||||||||||| || || || |||||||| || || | ||||| Sbjct 859269 CGAAGACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGGGTT 859328 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || ||||||||||| ||||| || | || || ||||||||||||| || Sbjct 859329 CGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCC 859388 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| |||||||| || || || ||||||||||| || || ||||| ||| Sbjct 859389 TCCTTGTCTTGGATCTTCGACTTAACATTGTCGATGGTGTCGGACGACTCGACCTCAAGA 859448 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| |||||||| || || ||||| || Sbjct 859449 GTGATGGTCTTTCCGGTAAGGGTCTTGAC 859477 >seq25 Length=676740 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||| || | || || Sbjct 267265 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCC 267206 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || || |||||||| || |||| || ||||||||| Sbjct 267205 TCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 267146 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || |||||||| ||||| ||| Sbjct 267145 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 267086 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || |||||||| ||||| || || Sbjct 267085 TTGCCCGTGAGGGTCTTCACGAA 267063 >seq52 Length=261245 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| ||| ||| || |||||||| || || | || || | || ||| Sbjct 16359 AGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 16418 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || || || ||||| || |||| || ||||||||| Sbjct 16419 TCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 16478 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || || || ||||||||||| ||| || ||||| || ||||| Sbjct 16479 TGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGA---CTCCACCTCAAGGGTGATA 16535 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| || || | |||||| Sbjct 16536 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 16570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147722729120