Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq52 150 1e-31 seq14 134 1e-26 seq25 129 4e-25 >seq52 Length=261245 Score = 150 bits (166), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||||||||||| ||||||||||| |||| ||| || |||| || Sbjct 16362 ACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCG 16421 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| |||||||| || | || | ||| ||||| ||| Sbjct 16422 AGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGG 16481 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||||||| || |||||||| | || || |||| Sbjct 16482 ATCTTGGACTTGACATTGT--CGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCT 16539 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | |||||||||||||| |||||||| |||||||| Sbjct 16540 TGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 16573 >seq14 Length=1021207 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| |||||| |||||| ||||||||||||||| | ||| | || ||| Sbjct 858825 ACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGCTTAAGGTGCGACCATCTTCC 858884 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||| |||||||| | ||| | |||||||| ||| Sbjct 858885 AGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 858944 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||||| ||||| || || | ||||| |||||| Sbjct 858945 ATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCAACTTCTAGGGTAATAGTCTTT 859004 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||| ||||| || ||||| Sbjct 859005 CCCGTCAATGTCTTGACGAAAATCTGCAT 859033 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||||||||||| || |||||||| |||| || ||| |||| || Sbjct 859572 ACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCG 859631 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || ||||| ||||| || || | ||| | ||| ||||| ||| Sbjct 859632 AGCTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGG 859691 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | ||||| || | |||||| ||||| | || || ||||| Sbjct 859692 ATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTG 859751 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||| ||||| Sbjct 859752 CCAGTGAGAGTCTTGACGAAGATCTGCAT 859780 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||||| | || ||||| || || |||||| || || ||||| || Sbjct 859031 CATACCACCACGAAGTCTGAGAACAAGGTGCAGAGTTGACTCCTTCTGAATATTGTAGTC 859090 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || |||| |||||| || |||||||| | || || || || | Sbjct 859091 GCTCAGTGTTCGGCCATCCTCCAACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGG 859150 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| | || | ||| | || ||||| | || | Sbjct 859151 CGGGATTCCTTCCTTGTCCTGGATCTTG-GATTTGACGTTGTCGATCGTGTCCGAAGACT 859209 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || |||||||| || |||||||||||||||||||||||||| Sbjct 859210 CCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 859261 Score = 109 bits (120), Expect = 4e-19 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||||| ||||||||||| |||| || || | || || Sbjct 859281 ACGAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCA 859340 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || ||||| |||||||| || | ||| | || ||||| || Sbjct 859341 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGG 859400 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||||| || || ||||| | || || |||| Sbjct 859401 ATCTTCGACTTAACATTGT--CGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCT 859458 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 |||| || |||||||| |||| Sbjct 859459 TTCCGGTAAGGGTCTTGACGA 859479 >seq25 Length=676740 Score = 129 bits (142), Expect = 4e-25 Identities = 155/205 (76%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || ||||| || ||| |||||| ||||||||||| |||| ||||| | || |||| | Sbjct 267262 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCG-GC-CGTCCT 267205 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| ||||| ||||||| |||||| || || | || | || ||||| ||| Sbjct 267204 CAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCT 267145 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| || ||| | |||||||||| || |||||||| | || || || Sbjct 267144 GGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGT 267087 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAG 44329 ||| ||||||||||||||||||||| Sbjct 267086 CTTGCCCGTGAGGGTCTTCACGAAG 267062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989136433696