Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20EC38_20[genbank_20GCA_5F002120335.1_202017-05-11] 288 sequences; 47,717,833 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq52 170 2e-37 seq25 140 3e-28 seq14 140 3e-28 >seq52 Length=261245 Score = 170 bits (188), Expect = 2e-37 Identities = 177/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || |||||||||||||| ||||| ||||||||| Sbjct 16344 CCACCACGGAGGCGGAGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 16403 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||| |||||||||||||| ||||| ||||| ||||| | |||| Sbjct 16404 AGAGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGA 16463 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||| || | || | |||||||| ||||||| Sbjct 16464 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGCTAGACTCCA 16521 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 16522 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 16571 >seq25 Length=676740 Score = 140 bits (154), Expect = 3e-28 Identities = 164/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| |||||||| Sbjct 267280 CCACCACGGAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 267221 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || || |||||||||||||| ||||| ||||||||||| | |||| Sbjct 267220 AGAGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGA 267161 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | |||||| ||||||| Sbjct 267160 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 267103 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 |||| | || || || || ||||| || ||||| ||||| Sbjct 267102 CCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 267063 >seq14 Length=1021207 Score = 140 bits (154), Expect = 3e-28 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || |||||||||||||||||||| |||||||| Sbjct 859553 GCCACCACGCAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 859612 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| ||||||||||| || ||||| |||| ||||||||||| | || Sbjct 859613 AAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGG 859672 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| || ||| ||| | | | || || || || | Sbjct 859673 AATACCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCGATGGTATCCGAGGATTCGA 859731 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 |||| | || || || || || || || ||||| ||||| |||||||| || ||| Sbjct 859732 CCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTTGTCG 859787 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || |||||||| ||||| |||||||| Sbjct 859263 CCACCGCGAAGACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAC 859322 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||||||||| |||| ||||| ||||| | ||| Sbjct 859323 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 859382 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||| ||| | | | |||||| |||||| || Sbjct 859383 ATGCCCTCCTTGTCTTGGATCTTCGACTT-AACATTGTCGATGGTGTCGGACGACTCGAC 859441 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 859442 CTCAAGAGTGATGGTCTTTCCGGTAAGGGTCTTGACGA 859479 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || |||||| ||||||||| ||||| || ||| Sbjct 858807 CCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGCTT 858866 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || |||||||| || ||||| || || || || || |||| ||| Sbjct 858867 AAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGGA 858926 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || || ||||| || | | | |||||| || || || Sbjct 858927 ATGCCTTCCTTGTCCTGAATCTTGCTCTTCA-CGTTGTCGATGGTGTCGGAAGATTCAAC 858985 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || ||||||| ||||| |||||||||||||| Sbjct 858986 TTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACGAAAATCTGCAT 859033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| || |||||||||||| || |||||| || || || | || || Sbjct 859053 ACAAGGTGCAGAGTTGACTCCTTCTGAATATTGTAGTCGCTCAGTGTTCGGCCATCCTCC 859112 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCAT 41772 | |||||| || || || || || || |||||||| |||||| || ||||||||| | Sbjct 859113 AACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCT-TCCTTGTCC-T 859170 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | || | || ||| | | | ||||| ||||||||||| | || ||||| | Sbjct 859171 GGATCTTGGATTTGACGTTGTCGATCGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCT 859230 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| ||||| || ||||| Sbjct 859231 TGCCGGTGAGGGTCTTCACGAAGATTTGCAT 859261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302335705600