Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 138 2e-27 seq20 84.2 5e-11 >seq6 Length=1299473 Score = 138 bits (152), Expect = 2e-27 Identities = 182/251 (73%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437 || || | ||||| || || || || | ||| ||||||||| | || ||| | | Sbjct 1188800 TCGAAGACATCATCACTGATGCCGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGC 1188741 Query 230438 CATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCG 230497 | || ||| | ||||||||| |||| || ||| |||||||| || ||||| |||| Sbjct 1188740 CCTGCGCCCTGCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTTGCCG 1188681 Query 230498 ACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCAT 230557 | || || |||| || || || ||||||| || ||||| || | |||||||| | | Sbjct 1188680 ATCGTCTTCTTGTCGCTCTCGGCAACGAGAAGGTCTACAAGTCGACCAACCCCTTCGACT 1188621 Query 230558 TTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACT 230617 | |||||| ||| || || || ||||||||||||||||| ||||||||| |||||| Sbjct 1188620 TCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACT 1188561 Query 230618 ATCAG-AGGCC 230627 | ||| ||||| Sbjct 1188560 ACCAGAAGGCC 1188550 >seq20 Length=502720 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || | ||| |||| ||||||||||| ||||| || || || | || Sbjct 219652 GGGGAAACCCTCGACCTGCTCGTTGTTGATAGCGCGCATGAGGGTGGACTTTCCGGAACC 219711 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || || || ||||||||||| | || || || || || | || | ||| || Sbjct 219712 GTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGAGATGGGTCTGGTTGAG 219771 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 |||||| || |||| || || ||||| || || | |||||||||||||| Sbjct 219772 AAGAATCTTGGCACCGTAGGCGAGAGAGAAAGTGCAGTTGCACAGATCCTCACC 219825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057779910887390