Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 196 6e-45 seq6 86.0 7e-12 >seq5 Length=1316942 Score = 196 bits (216), Expect = 6e-45 Identities = 469/699 (67%), Gaps = 14/699 (2%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||||| | ||| || |||| | || || || ||||| Sbjct 714295 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATG 714236 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||||||||| |||||||| |||| || ||||| | || | || || || || Sbjct 714235 AAGAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCG 714176 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| || || |||||| | | | ||| | ||||| || || | ||| ||| Sbjct 714175 TGGTTCTTGCGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATG 714116 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | || || || ||||| || ||||| || | ||||| ||| ||||| || | Sbjct 714115 GCGAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAG 714056 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| ||||| | ||| ||||| | ||| ||||| |||| || || ||| Sbjct 714055 ACACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCA 713996 Query 54281 CTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 ||||||| ||| | | | | ||||| || || || ||||| || ||||| | || Sbjct 713995 GTGGCACGGATA-CGGTGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGC 713937 Query 54340 GCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 || ||| || | || |||||||| ||||| || ||||| ||| |||||| || || | Sbjct 713936 ACA-CGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGA 713878 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | ||| ||||| ||| | || || || || || || | ||| || ||||| || | Sbjct 713877 AGCAGGAAGACAGCTGGGGCTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGG 713818 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTC---GATA-GCTGAGTCTATATC-CCA 54513 ||||| || || | || ||||| ||||| || | ||| | | | ||| || Sbjct 713817 TAAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGT-CATCGCCC 713759 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 |||| || || | |||||||| | ||||||||| |||| ||||| |||||| Sbjct 713758 CAGATG----CCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAACAATCTTGCC 713703 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633 || || || || | || ||| |||| ||| || ||||| || || | ||| || Sbjct 713702 GTCAATCTTGAGGAGATAAGATCGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTGAA 713643 Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 ||| || || || | ||| | |||| ||| | ||||| Sbjct 713642 GTCGCGGTCATACACAATCGCGGAGTCGAGCTCCTCCTT 713604 >seq6 Length=1299473 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| || ||| || ||||| || | | ||| | |||||||| || || || Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAA 24279 || || || || || |||||||||| Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAA 1188989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593697457795440