Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq5 196 6e-45
seq6 86.0 7e-12
>seq5
Length=1316942
Score = 196 bits (216), Expect = 6e-45
Identities = 469/699 (67%), Gaps = 14/699 (2%)
Strand=Plus/Minus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| || || | || ||||||| | ||| || |||| | || || || |||||
Sbjct 714295 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATG 714236
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
||||||||||| |||||||| |||| || ||||| | || | || || || ||
Sbjct 714235 AAGAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCG 714176
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| || || |||||| | | | ||| | ||||| || || | ||| |||
Sbjct 714175 TGGTTCTTGCGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATG 714116
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | | || || || ||||| || ||||| || | ||||| ||| ||||| || |
Sbjct 714115 GCGAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAG 714056
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| ||||| | ||| ||||| | ||| ||||| |||| || || |||
Sbjct 714055 ACACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCA 713996
Query 54281 CTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339
||||||| ||| | | | | ||||| || || || ||||| || ||||| | ||
Sbjct 713995 GTGGCACGGATA-CGGTGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGC 713937
Query 54340 GCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
|| ||| || | || |||||||| ||||| || ||||| ||| |||||| || || |
Sbjct 713936 ACA-CGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGA 713878
Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458
| ||| ||||| ||| | || || || || || || | ||| || ||||| || |
Sbjct 713877 AGCAGGAAGACAGCTGGGGCTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGG 713818
Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTC---GATA-GCTGAGTCTATATC-CCA 54513
||||| || || | || ||||| ||||| || | ||| | | | ||| ||
Sbjct 713817 TAAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGT-CATCGCCC 713759
Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573
|||| || || | |||||||| | ||||||||| |||| ||||| ||||||
Sbjct 713758 CAGATG----CCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAACAATCTTGCC 713703
Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633
|| || || || | || ||| |||| ||| || ||||| || || | ||| ||
Sbjct 713702 GTCAATCTTGAGGAGATAAGATCGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTGAA 713643
Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672
||| || || || | ||| | |||| ||| | |||||
Sbjct 713642 GTCGCGGTCATACACAATCGCGGAGTCGAGCTCCTCCTT 713604
>seq6
Length=1299473
Score = 86.0 bits (94), Expect = 7e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| ||||| || ||| || ||||| || | | ||| | |||||||| || || ||
Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254
|| ||||| ||||||||||| || ||||| || ||||| ||||| | || |||||
Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964
Query 24255 ATTCCTTCTACTGCCGCAAAGGCAA 24279
|| || || || || ||||||||||
Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAA 1188989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593697457795440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |