Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 118 9e-22
seq3070 114 1e-20
seq8 96.9 3e-15
>seq1388
Length=1638
Score = 118 bits (130), Expect = 9e-22
Identities = 167/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || || || | |||||| | |||| ||||||||||| || ||||| ||||| |
Sbjct 1302 TTCCACCGCGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1361
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|| || || |||| || ||||| ||||| || | ||||| | ||||||||| ||
Sbjct 1362 AAAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGG 1421
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | ||||||||||| |||||| || || | ||| || || | ||||
Sbjct 1422 GAATACCTTCCTTGTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCCA 1481
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181
||| | ||||| |||||||| ||||| ||||| ||||| || ||||| ||||
Sbjct 1482 CTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCATACTGAA 1536
Score = 107 bits (118), Expect = 2e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || || || | |||||| | |||| ||||||||||| || || || ||||| |
Sbjct 1074 TTCCACCGCGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGG 1133
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|| || | |||| || ||||| ||||| || |||| |||| ||||||||| ||
Sbjct 1134 AAAGAGTGCGACCGTCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGG 1193
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCC 21125
| | ||||||||||| || ||| || || || | ||| ||| || || |||
Sbjct 1194 GAATACCTTCCTTGTC-CTGAATTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCA 1252
Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
||| | || |||||||| |||||||| || ||||| || || ||||||
Sbjct 1253 ACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 1303
Score = 105 bits (116), Expect = 6e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | |||||||||||| ||||| |||||||| ||||| | ||||| || | |||
Sbjct 545 AGTACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCC 604
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| || || || || || | ||||| | ||||| ||| ||| | |||||||||||
Sbjct 605 TCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGGATACCTTCCTTGTCT 664
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||| ||||| | ||| |||||| || || ||| | |||||||||
Sbjct 665 TGAATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCGACTTCAAGAGTAATGGTC 724
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|| || || | || |||||||| || ||||||
Sbjct 725 TTTCCAGTAAGAGTCTTGACAAAAATCTGCATT 757
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || || || | |||||| | ||| | ||| ||||| || || ||||| || || |
Sbjct 300 TTCCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGG 359
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
||||| | ||||||| ||||| || || || | || || | ||||||||| |
Sbjct 360 AGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAG 419
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCC 21125
| | ||||||||||| || ||| || ||||| | | | ||||| || |||
Sbjct 420 GAATACCTTCCTTGTC-CTGAATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCC 478
Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||| | ||| || ||||| || || | ||||| || |||||||||||
Sbjct 479 ACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528
>seq3070
Length=537
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | |||||| | ||| | ||| |||||||| |||||||| ||||| | |
Sbjct 251 CCACCACGAAGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 192
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | |||||||| || || |||||| | || || | |||||| ||| ||
Sbjct 191 AGAGTGCGGTCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGA 132
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| ||||| ||||| | || || |||| | ||| |
Sbjct 131 ATTCCTTCCTTGTCCTGAATCTTGGTCTTCACATTGCTGATGCTATCGGATGACTCTACT 72
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | || || ||||| ||||||| ||||||||| || || ||||| |||
Sbjct 71 TCGAGAGTGATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCATCTTG 21
>seq8
Length=1068389
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| || | || | |||||||||||| || ||||| ||||| |
Sbjct 631326 CCACCACGGAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 631267
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || ||||||| ||||| || || || | || || | |||||||||| |||
Sbjct 631266 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 631207
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| ||||| || |||||| ||||| | | ||| |||||| || |||
Sbjct 631206 ATGCCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATAGTATCCGAGGACTCGACC 631147
Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151
|| | ||| |||||||| || ||
Sbjct 631146 TCAAGGGTGATGGTCTTTCCCGT 631124
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| |||||||| |||||||| ||||| | ||||| || | ||||| ||||| |||||
Sbjct 631578 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 631519
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || | | |||||||||| ||| | || ||||| || |||||| ||
Sbjct 631518 GCAAAGATCAAGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTCGACTTG 631459
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | ||| ||| ||| | |||| || | ||| |||||||||||||| | ||
Sbjct 631458 ACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 631399
Query 21159 TTGAC 21163
|||||
Sbjct 631398 TTGAC 631394
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | || |||||||| || ||||| || || |
Sbjct 632064 CCGCCACGAAGACGGAGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTC 632005
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | | ||||||||||| || || ||| | ||||||| ||||||||| |||
Sbjct 632004 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGA 631945
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| ||||| | | ||| ||||| | || |||
Sbjct 631944 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTATCGCTGGACTCGACC 631885
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || || ||||| ||||| | || || || || || |||||
Sbjct 631884 TCAAGAGTGATCGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 631838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422242459138148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |