Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq19 127 2e-24 seq1388 109 6e-19 seq8 102 9e-17 seq15 93.3 5e-14 >seq19 Length=502728 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||||||||||| || || ||||| || |||||| || | || || Sbjct 172591 CACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 172650 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||||||||| || || |||||||||||||| | || | || |||||||||| Sbjct 172651 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 172710 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || |||| ||| | | | |||||| || ||||| || | ||||| || | Sbjct 172711 GATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCT 172769 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | ||||| || ||||| || ||||| ||||| || Sbjct 172770 TCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 172803 >seq1388 Length=1638 Score = 109 bits (120), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||| | ||||| || |||| || ||||||||||| ||||| Sbjct 109 CTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 168 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 ||||| ||||||||||| | || | || ||||| ||| ||| | || || |||| Sbjct 169 GATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCC-TGAATCTTAGTCTTGACGT 227 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | |||||| |||||||| || | || ||||| || || || || ||||| | Sbjct 228 TCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTTCA 287 Query 43171 CAAAGATTTGCATT 43184 | || || |||||| Sbjct 288 CGAAAATCTGCATT 301 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| |||| ||| || || |||| || || |||||||||||||| Sbjct 794 TCCTTTTGGATGTTGTAGTCAGACAGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAG 853 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 ||||| ||||||||||| | || | || ||||| ||| ||| | || || || | | Sbjct 854 ATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCC-TGAATCTTAGTCTTCACGTT 912 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || || || || | |||||||| || || |||| ||||| || Sbjct 913 CTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGAC 972 Query 43172 AAAGATTTGCATT 43184 || || |||||| Sbjct 973 GAAAATCTGCATT 985 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || | || ||| | ||| | ||| | || ||| || || || |||||||| | Sbjct 301 TCCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGA 360 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || ||||||||||||||||| ||||| || |||||||| | || Sbjct 361 GAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGG 420 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||||||| ||| |||| || || | || | | || || ||||||| Sbjct 421 AATACCTTCCTTGTCC-TGAATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCA 479 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| || || || || || || || || || |||||||| Sbjct 480 CTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528 >seq8 Length=1068389 Score = 102 bits (112), Expect = 9e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| |||| ||| || || | || || |||||||| || ||||| Sbjct 631801 CTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCCTCAAGCTGCTTTCCGGCGAA 631742 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 |||||||||||||| || | || | || |||||||||| ||| | || | |||| || Sbjct 631741 GATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGA-CG 631684 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | || || || ||||| |||| ||||| || || || || || ||||| Sbjct 631683 TTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCTTACCGGTGAGGGTCTTG 631624 Query 43170 ACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 631623 ACAAAGATCTGCAT 631610 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| ||| || || | || || |||||||||||||| || Sbjct 632029 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 631970 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || |||||||||||||||| || | || |||||||||| ||| | || | || | Sbjct 631969 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 631911 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||||| || || || || | ||||| || || || || || ||||| | Sbjct 631910 TGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAGGGTCTTCA 631851 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 631850 CGAAGATCTGCAT 631838 >seq15 Length=666898 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | ||||| || | || || |||||||| |||||||| | Sbjct 143566 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 143507 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | |||||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 143506 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 143447 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 143446 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 143387 Query 43174 A 43174 | Sbjct 143386 A 143386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571794348466840